Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n15r
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)                   28   7.1  

>SB_56554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 340 GKLKERYGNIRNNLSKAVGAKRKQDG 263
           G  +ER   IR+ LSKAV AKR Q+G
Sbjct: 14  GASRERVKYIRDMLSKAVQAKRTQEG 39


>SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 685 AVISFFCLFFYCLPTILDDDLPPKRFKTFVYNSKCVY 575
           AVI  +CL    LP I   D+ P  +K+F++  +CV+
Sbjct: 385 AVIWLYCLVMSILPVIGAIDISP--YKSFLFYGQCVF 419


>SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)
          Length = 618

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 367 SWETTNRRIKIIYKGLPSLLLQFIVCGICCLIIEMF 474
           SW T+++ + +I  G P   L ++VC  C  +I  +
Sbjct: 470 SWSTSDQSLTVIVNGKPVDTLSYLVCFGCPPVISSY 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,523,533
Number of Sequences: 59808
Number of extensions: 336336
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)