Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n15r
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23645-3|AAK26139.1|  211|Caenorhabditis elegans Zinc finger pro...    33   0.22 
Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>L23645-3|AAK26139.1|  211|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform b protein.
          Length = 211

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 361 IAASTKMGKLKERYGNIRNNLSKAVGAKRKQDGRK 257
           +A + K  K+KER+ + R  L + VG KRK  G +
Sbjct: 24  VACTVKKEKIKERHNHNRTLLKRTVGGKRKDTGHR 58


>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -2

Query: 652 CLPTILDDDLPPKRFKTFVYNSKCVY--N*RTTVK*NEFFKKGSTHDKR*DDDSSRTC 485
           C+ T++DD+ PP  F  F  N K +   N  +T+K  + F KG T  +    ++S+ C
Sbjct: 247 CIKTLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWD-FSKGKTLKQYTGHENSKYC 303


>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 405 VNDFNSSIRRFPRTPSQLRLKWENLKNATAT*ETTLVRL 289
           +++ + ++R   +  SQLR + E LKNA +T E+TL  L
Sbjct: 198 LSEMDRTLREEQQQKSQLRSQTETLKNALSTSESTLSML 236


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 405 VNDFNSSIRRFPRTPSQLRLKWENLKNATAT*ETTLVRL 289
           +++ + ++R   +  SQLR + E LKNA +T E+TL  L
Sbjct: 198 LSEMDRTLREEQQQKSQLRSQTETLKNALSTSESTLSML 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,755
Number of Sequences: 27780
Number of extensions: 273790
Number of successful extensions: 660
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)