Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n15r
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25800.1 68415.m03096 expressed protein                             32   0.47 
At2g38250.1 68415.m04697 DNA-binding protein-related contains si...    30   1.9  
At1g55210.1 68414.m06306 disease resistance response  protein-re...    28   7.7  

>At2g25800.1 68415.m03096 expressed protein
          Length = 996

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = -3

Query: 627 TYLQNALKLSFIILSVFIIKELQ*NKMNSSRKAAPMTKDETMILAEL 487
           TY++++L+ SF   S+ I+ E +  K +SSR+A+   K+   +LA L
Sbjct: 450 TYIRSSLRTSFAQASICIVVEDRMEKADSSRRASRNQKNPLPVLAIL 496


>At2g38250.1 68415.m04697 DNA-binding protein-related contains
           similarity to DNA-binding protein GI:170271 from
           [Nicotiana tabacum]
          Length = 289

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 417 WQTLVNDFNSSIRRFPRTPSQLRLKWENL 331
           W+ + N      + FPR+P Q + KW+NL
Sbjct: 71  WEVISNKMRD--KSFPRSPEQCKCKWKNL 97


>At1g55210.1 68414.m06306 disease resistance response
           protein-related/ dirigent  protein-related smimilar to
           dirigent protein [Thuja plicata] gi|6694699|gb|AAF25360;
           similar to pathogenesis-related protein [Pisum sativum]
           gi|4585273|gb|AAD25355
          Length = 187

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 390 SSIRRFPRTPSQLRLKWENLKNATAT*E 307
           S + RF R   + R KW NLKN  AT E
Sbjct: 152 SGLFRFARGYVEARTKWINLKNGDATVE 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,179,779
Number of Sequences: 28952
Number of extensions: 251763
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)