Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n15f
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7QCX9 Cluster: ENSANGP00000016928; n=1; Anopheles gamb...    47   3e-04
UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria gla...    40   0.051
UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster subgro...    40   0.068
UniRef50_Q9U4W1 Cluster: Pol-like protein; n=1; Aedes aegypti|Re...    39   0.090
UniRef50_Q9GP60 Cluster: Pol protein; n=1; Drosophila melanogast...    38   0.16 
UniRef50_UPI00015B43F6 Cluster: PREDICTED: similar to pol-like p...    35   1.9  
UniRef50_A0YBF4 Cluster: Type II and III secretion system protei...    34   2.6  
UniRef50_Q9TYX8 Cluster: Putative uncharacterized protein R11E3....    34   3.4  
UniRef50_Q8WPT4 Cluster: H25N7.03 protein; n=4; Trypanosoma bruc...    33   4.5  
UniRef50_Q08484 Cluster: GTPase-activating protein GYP1; n=5; Sa...    33   4.5  
UniRef50_Q8IJY4 Cluster: Regulator of nonsense transcripts, puta...    33   5.9  
UniRef50_Q4UFK4 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  
UniRef50_P53976 Cluster: Uncharacterized protein YNL018C; n=4; S...    33   7.8  

>UniRef50_Q7QCX9 Cluster: ENSANGP00000016928; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000016928 - Anopheles gambiae
           str. PEST
          Length = 170

 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
 Frame = +2

Query: 224 GSAYDLRTVEILGCGTRVPCFVTLGNEVPVILKFRADFSSRK--LDQDVVININHVNLKT 397
           G+ YD+ ++ +  C T  PC +  G  V V  +F A+ +S    L  +    +N V  K 
Sbjct: 51  GTKYDVISINLSSCAT-APCTMHRGTNVKVKAEFSANGASTDSVLKHEAYFILNSVKTKA 109

Query: 398 PVTPELCEVASCLVSVDSMTSYTSVMSVPNNMALNQRGFLRWSVFNEDNLLVLCYSVLV 574
            +TP  CE + C +       +++ + V  ++     G LRW + N+   ++LCY + V
Sbjct: 110 VITPTTCEGSVCPLQGTQGLLFSADIYVNADLP-PINGKLRWELRNKWGDVLLCYQLPV 167


>UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria
           glabrata|Rep: Pol-like protein - Biomphalaria glabrata
           (Bloodfluke planorb)
          Length = 1222

 Score = 39.9 bits (89), Expect = 0.051
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -2

Query: 266 HNLVFLQSLSRRQILTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIIS 96
           H+L  L   S   +    G   + IDL++C P L     WS       SDH+PIII+
Sbjct: 158 HDLCILNDASPTYLHPGTGS-FTCIDLTVCVPGLLDDFKWSVSNDLRGSDHFPIIIT 213


>UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster
           subgroup|Rep: Putative ORF2 - Drosophila melanogaster
           (Fruit fly)
          Length = 1219

 Score = 39.5 bits (88), Expect = 0.068
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 281 KVLESHNLVFLQSLSRRQILTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPII 102
           + +++ +L+ L   S     T      + IDL++C+P LA    W  L   + SDH+PII
Sbjct: 153 RFIDNMHLILLNDKSPTHFSTH--NTYTHIDLTLCSPILAPHAKWKILNDLHGSDHFPII 210

Query: 101 IS-FP 90
            + FP
Sbjct: 211 TTLFP 215


>UniRef50_Q9U4W1 Cluster: Pol-like protein; n=1; Aedes aegypti|Rep:
           Pol-like protein - Aedes aegypti (Yellowfever mosquito)
          Length = 1208

 Score = 39.1 bits (87), Expect = 0.090
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 212 GEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIII 99
           G+  SAID+S+C+P + + L W+       SDH+PI I
Sbjct: 180 GQRNSAIDVSLCSPSIVNRLLWTAKEDPMGSDHHPIFI 217


>UniRef50_Q9GP60 Cluster: Pol protein; n=1; Drosophila
           melanogaster|Rep: Pol protein - Drosophila melanogaster
           (Fruit fly)
          Length = 1227

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = -2

Query: 278 VLESHNLVFLQSLSRRQILTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIII 99
           V+  ++L+ L   S   + T      + ID+S+ +PQ+A   SWS   + + SDH+PI I
Sbjct: 158 VILENSLIVLNDGSPTHLSTH--NTFTHIDISLISPQIAHMCSWSISDNLHGSDHFPITI 215


>UniRef50_UPI00015B43F6 Cluster: PREDICTED: similar to pol-like
           protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to pol-like protein - Nasonia vitripennis
          Length = 963

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -2

Query: 263 NLVFLQSLSRRQILTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIISFPLA 84
           NLV L    R  ++ KP     + D+S  +  L     WS L      DH P+ I+    
Sbjct: 168 NLVILNDPFRATLIPKPQNKPGSPDISAISLNLIHKTEWSLLGDALGGDHLPVSITITNK 227

Query: 83  KKD 75
           K D
Sbjct: 228 KTD 230


>UniRef50_A0YBF4 Cluster: Type II and III secretion system protein;
           n=1; marine gamma proteobacterium HTCC2143|Rep: Type II
           and III secretion system protein - marine gamma
           proteobacterium HTCC2143
          Length = 617

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = +2

Query: 287 VTLGNEVPVILKFRADFSSRKLDQDVVININHVNLKTPVTPELCEVASCLVSV-DSMTSY 463
           + +G+ VP I       SS   D    I  + + L   +TP++ E  S  + +   + + 
Sbjct: 430 ILVGSNVPFITGQSTGSSSSTGDPFTTIERHDIGLTLKITPQINEGDSITLDILQEVETI 489

Query: 464 TSVMSVPNNMALNQRGFLRWSVFNEDNLLVLCYSVLVQTQSPLQK 598
           +   +V N++  N+R      +  +D +LVL   V   TQ  + K
Sbjct: 490 SEATTVANDIVTNKRSIKTKVIVEDDAILVLGGLVSDDTQELVSK 534


>UniRef50_Q9TYX8 Cluster: Putative uncharacterized protein R11E3.3;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein R11E3.3 - Caenorhabditis elegans
          Length = 931

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 203 ISAIDLSICTPQLASSLSWSTLCSTYNSDHYPI 105
           IS+ D++ICT  LA+   WSTL     SDH P+
Sbjct: 86  ISSPDITICTADLATKCHWSTLYK-LGSDHIPM 117


>UniRef50_Q8WPT4 Cluster: H25N7.03 protein; n=4; Trypanosoma
           brucei|Rep: H25N7.03 protein - Trypanosoma brucei
          Length = 1657

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 90  LGEKGLNYFLNLINKILLTGDIPPSWRSQI 1
           LG   LN  L L N+ L TG +PP+W++ +
Sbjct: 523 LGRTALNVVLRLFNESLRTGVVPPAWKTGV 552


>UniRef50_Q08484 Cluster: GTPase-activating protein GYP1; n=5;
           Saccharomycetales|Rep: GTPase-activating protein GYP1 -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 637

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +2

Query: 386 NLKTPVTPELCEVASCLVSVDSMTSYTSVMS--VPNNMALNQRGFLRWSVFNEDNLLVLC 559
           ++K PVTP    VAS +       S T+ +S   PNN A+   G +R S  NE ++ V C
Sbjct: 522 DIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNN-AVEDSGKMRQSSLNEFHVFV-C 579

Query: 560 YSVLVQTQSPLQK 598
            + L++    L +
Sbjct: 580 AAFLIKWSDQLME 592


>UniRef50_Q8IJY4 Cluster: Regulator of nonsense transcripts,
           putative; n=8; Plasmodium|Rep: Regulator of nonsense
           transcripts, putative - Plasmodium falciparum (isolate
           3D7)
          Length = 1554

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 642 DMVEKFIQCNSCRRNFCNG 586
           D ++  +QCN+C+R FCNG
Sbjct: 254 DSIDSVVQCNNCKRWFCNG 272


>UniRef50_Q4UFK4 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 1905

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +2

Query: 440 SVDSMTSYTSVMSVPNNMALNQRGFLRWSVFNEDNLLVLCYSVLV 574
           +V ++ + TSV SVPNN+ LN    +     N +N++++ + +++
Sbjct: 453 TVPTVPTVTSVPSVPNNIQLNGINDIVLENLNNNNIIIILFEIII 497


>UniRef50_P53976 Cluster: Uncharacterized protein YNL018C; n=4;
           Saccharomyces cerevisiae|Rep: Uncharacterized protein
           YNL018C - Saccharomyces cerevisiae (Baker's yeast)
          Length = 612

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -2

Query: 269 SHNLVFL-QSLSRRQILTKPGEVISAIDLSICTPQLASSLSWST-LCSTYNSDHYPIIIS 96
           SHN   L  SL +R   T      SA + +   P L SS+S S+ + S++N  H P I S
Sbjct: 166 SHNRAMLPSSLVQRNNATTSPTTDSASENNESVPSLTSSVSTSSSVYSSWNPPHSPHISS 225

Query: 95  FP 90
           FP
Sbjct: 226 FP 227


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,223,714
Number of Sequences: 1657284
Number of extensions: 10630762
Number of successful extensions: 26038
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 25258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26034
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)