Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n15f
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 233 YDLRTVEILGCGTRVPCFVTL----GNEVPVILKFRADFSSRKLDQDVVININHVNLK 394
           YD+ ++  LG   R+  F+ L        PV+ ++  DF   +++   V ++N   +K
Sbjct: 561 YDV-SLSGLGSDRRLELFLELLPMLAPGAPVMTRYLGDFEGNQVEGSPVTSLNREEIK 617


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 332 DFSSRKLDQDVVININHVNLKTPVTP 409
           DFS R    D   + + VNL  P TP
Sbjct: 207 DFSKRGQKSDADSDSDVVNLSKPGTP 232


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 140 LCSTYNSDHYPI 105
           + S YN+D YPI
Sbjct: 5   MVSVYNNDFYPI 16


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 161 SSLSWSTLCSTYNSDHYPI 105
           +SLSW+  CS  ++   P+
Sbjct: 175 NSLSWNNPCSINSTSSQPV 193


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,733
Number of Sequences: 336
Number of extensions: 2827
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)