Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n15f
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    27   3.1  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   7.1  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   9.3  
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    25   9.3  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   9.3  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -1

Query: 447 STLTKQLATSHNSGVTGVFKLTWLMLITTSWSNFLDEKSARNFNITGTSLPNVTKQGTRV 268
           S+LT    +  +S VTG+    +  ++ +S + F D   A +F +T      +T  G   
Sbjct: 364 SSLTGNAKSGIDSSVTGMPSDNYARVVESSTAEFFDPSLASSFGLTNYRTKPLT-TGFNH 422

Query: 267 PQP 259
           P+P
Sbjct: 423 PRP 425


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +2

Query: 380 HVNLKTPVTPELCEVASCLVSVDSMTSYTSVMSVPNNMALNQRGFLRWS 526
           H +L+  V P+     SC+++ + +   T ++ +P N+ +N+R   R+S
Sbjct: 22  HPSLEFSVIPD---AGSCVLANNDINENTVLLKLPPNILINKRTCSRYS 67


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 329 ADFSSRKLDQDV----VININHVNLKTPVTPELCEVASCLVSVDSMTSYTS 469
           ADF    LD       +ININHVN  +P T    E    L +  S  ++++
Sbjct: 79  ADFFKDNLDDFALDGPIININHVNQTSPYTHHNAEPLHDLQTFSSNLNHSN 129


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 170 QLASSLSWSTLCSTYNSDHYPIIISFPLA 84
           Q+ + L W   C  YN D     +S PL+
Sbjct: 497 QITTWLKWPRYCEYYNFDIAETFLSIPLS 525


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 451 GINAY*TACDLAQFWGHRS 395
           G  A  TAC LA+ WG+++
Sbjct: 115 GAEAVETACKLARLWGYKA 133


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -1

Query: 480 TDITLV*DVMESTLTKQLATSHNSGVTGVFK-LTWLMLITTSWSNFLDEKSARNFNITGT 304
           T+ T V  +   T T   + +++  +T      T L++ TTS++N     +      T T
Sbjct: 114 TNTTQV-SLTNGTTTNSYSNTNSLPITDTINGTTELIIPTTSYNN--QSHTLIYSTYTST 170

Query: 303 SLPNVTKQGTRVPQPSISTV 244
            LPN T   + +P  +IST+
Sbjct: 171 YLPNSTIDLSILPHSTISTL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,671
Number of Sequences: 5004
Number of extensions: 47613
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)