Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n15f
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072...    30   1.8  
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593     28   5.5  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    28   5.5  
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032...    28   7.3  

>04_04_1073 -
           30606472-30606515,30606897-30606988,30607152-30607243,
           30607362-30607469,30607614-30607748,30607826-30607871,
           30608320-30608420,30608512-30608649,30608721-30608819,
           30608920-30609036,30609941-30610102,30610271-30610330,
           30611120-30611216,30611238-30611296,30611364-30611480,
           30611922-30612020,30612115-30612180,30612405-30612542,
           30612659-30612742,30612820-30612892,30612937-30612992,
           30613074-30613182,30613253-30613335,30613406-30613489,
           30613679-30613750,30613827-30613904,30613984-30614067,
           30614142-30614212,30614497-30614566,30614866-30614955,
           30615046-30615177,30615250-30615350,30615634-30615691,
           30615762-30615878,30617981-30618133
          Length = 1094

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 245 TVEILGCGTRVPCFVTLGNEVPVILKFRADFSSRKLDQD 361
           T+ ++     +P  VTL N +PV++  R  FS RK+ +D
Sbjct: 436 TIVVVAVPEGLPLAVTLTNLIPVLICVRLAFSMRKMMRD 474


>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
          Length = 1278

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 368  ININHVNLKTPVTPELCEVASCLVSVDSMTSYTSVMSVPNNMA--LNQRGFLRWSVF 532
            I +N++ L++   P LC+  +  +   + T++TSV      MA   N+R  LR  +F
Sbjct: 1048 ITVNNILLESDFEPRLCDFGTAKLLGGASTNWTSVAGSYGYMAPGKNERKKLRSDLF 1104


>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
            27353739-27354606,27354784-27355957
          Length = 1790

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +2

Query: 350  LDQDVVININHVNLKTPVTPELCEVASCLVSVDSMTSYTSVMSVPNNMALNQRGFLRWSV 529
            LD D V +I+ +N    V P+L   AS  V  DS+T   +V++   +  ++  G +   +
Sbjct: 1488 LDNDNVTSISSINA---VEPDLIHSASLDVHTDSLTPADAVINDGQSCGVDNDGQMSRVI 1544

Query: 530  FNEDN 544
              E+N
Sbjct: 1545 NGEEN 1549


>07_03_1546 +
           27602598-27602917,27602995-27603052,27603130-27603252,
           27603896-27603992,27604095-27604131,27604244-27604349,
           27604547-27604604,27604705-27604802,27604911-27605030,
           27605622-27605667,27606336-27606522,27606747-27607263,
           27607361-27607453,27608101-27608286,27608364-27608574,
           27609263-27609387,27609518-27609664,27610114-27610236,
           27610445-27610799,27611076-27611305,27611785-27611877
          Length = 1109

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 480 TDITLV*DVMESTLTKQLATSHNSGVTGVFKL 385
           T + L+ D+ME T+T  LAT H S    + KL
Sbjct: 676 TYVDLLQDLMEKTITLALATGHKSFSASLSKL 707


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,589
Number of Sequences: 37544
Number of extensions: 284713
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)