Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n15f
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_57605| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_51609| Best HMM Match : p450 (HMM E-Value=0)                        28   5.7  
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)              28   7.5  
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)                       27   9.9  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/38 (36%), Positives = 27/38 (71%)
 Frame = +2

Query: 341 SRKLDQDVVININHVNLKTPVTPELCEVASCLVSVDSM 454
           SR++D+D +IN+   +L+T V  EL ++ + +V VD++
Sbjct: 242 SREMDRDTLINVAKTSLRTKVRTELADLLTEVV-VDAV 278


>SB_57605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -1

Query: 498 KAMLLGTDITLV*DVMESTLTKQLATSHNSGVTGVFKLTWLMLITTSW-SNFLDEKSARN 322
           KA   G  IT+V  +M+       +T    GVT +  +  ++++TT+  S    + +  +
Sbjct: 256 KAQGSGQVITIVPALMDQVCATDTSTRKTIGVTVIIIVIIIIIVTTTTASTATTDTTQHS 315

Query: 321 FNITGTSL--PNVTKQGTRVPQP 259
            N    SL  PN ++Q T V  P
Sbjct: 316 PNTLPLSLVNPNESRQPTTVNSP 338


>SB_51609| Best HMM Match : p450 (HMM E-Value=0)
          Length = 526

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 565 CASPDTKPVTKISSTTITLNE 627
           C + DTKP+  IS+ T+T NE
Sbjct: 497 CVTQDTKPLNIISNQTLTTNE 517


>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
          Length = 1597

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 260 GCGTRV--PCFVTLGNEVPVILKFRADFSSRKL 352
           GCG  +  P F TL +++   L+F+  F++RK+
Sbjct: 887 GCGVSLTDPAFATLPSDIRGFLRFQVYFTTRKI 919


>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 1737

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 208 SPGFVRICLRLKDCRNTRLWDSSTLLRHIR 297
           +PG + I  RL   R   L+D S LLRH R
Sbjct: 453 NPGTLTILQRLVHDRELHLYDGSRLLRHDR 482


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,572,225
Number of Sequences: 59808
Number of extensions: 341967
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)