Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n15f
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    34   0.099
Z30662-1|CAA83137.1|  344|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical ...    29   3.7  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 203 ISAIDLSICTPQLASSLSWSTLCSTYNSDHYPI 105
           IS+ D++ICT  LA+   WSTL     SDH P+
Sbjct: 86  ISSPDITICTADLATKCHWSTLYK-LGSDHIPM 117


>Z30662-1|CAA83137.1|  344|Caenorhabditis elegans Hypothetical
           protein T16H12.1 protein.
          Length = 344

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 296 GNEVPVILKFRADFSSRKLDQDVVININHVNLKTPVTPELCEVASCLVSVDSMTSYTS 469
           GN +P  ++   +F+    D    I+ N      PV+ E C+      S D  T YT+
Sbjct: 226 GNRMPTAIESEYNFNFSNDDISTEIHHNEEPTSKPVSSETCKFCGNRHSTDECTEYTT 283


>AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical
           protein F18A12.5 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 380 HVNLKTPVTPELCEVASCLVSVDSMTSYT 466
           H + K+ VTP+ CE   C++    + +Y+
Sbjct: 52  HFHSKSRVTPQFCESPQCIILAQELKAYS 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,912,246
Number of Sequences: 27780
Number of extensions: 260266
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)