Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n15f
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma m...    29   2.0  
At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma mem...    29   2.6  
At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r...    28   4.6  
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative...    27   8.1  
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative...    27   8.1  

>At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma
           membrane-type / Ca(2+)-ATPase isoform 2 (ACA2) identical
           to SP|O81108 Calcium-transporting ATPase 2, plasma
           membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2)
           {Arabidopsis thaliana}
          Length = 1014

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 356 GPIFLMKNQHEILILQELHCLM*RSKVLESHNLV 255
           GP+F  KNQ E+L L     +M RS  ++ H LV
Sbjct: 706 GPVFREKNQEELLELIPKIQVMARSSPMDKHTLV 739


>At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA7)
           identical to SP|O64806 Potential calcium-transporting
           ATPase 7, plasma  membrane-type (EC 3.6.3.8)
           (Ca(2+)-ATPase isoform 7) {Arabidopsis thaliana}; strong
           similarity to SP|O81108 Calcium-transporting ATPase 2,
           plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
           2) {Arabidopsis thaliana}
          Length = 1015

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 356 GPIFLMKNQHEILILQELHCLM*RSKVLESHNLV 255
           GP+F  KNQ E+L L     +M RS  ++ H LV
Sbjct: 707 GPVFREKNQEEMLELIPKIQVMARSSPMDKHTLV 740


>At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 698

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -2

Query: 254 FLQSLSRRQILT---KPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHY 111
           F+ S++R  ++    + G++  A+ +    P+L  ++SW+TL + Y  + Y
Sbjct: 190 FVDSVARNAMIAAYCREGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGY 240


>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
           factory-related similar to RNA helicase GB:AAF03534
          Length = 1317

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 407 PELCEVASCLVSVDSMTSYTSVMSV 481
           PELC V    +SVD + SYT + SV
Sbjct: 857 PELCHVILSPISVDMIYSYTFIPSV 881


>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
           (UBP8) similar to ubiquitin-specific protease 8 partial
           sequence GI:11993469 [Arabidopsis thaliana]
          Length = 622

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 306 TSLPNVTKQGTRVPQPSIS 250
           +SLP V+K GT+ PQ S+S
Sbjct: 456 SSLPEVSKSGTKRPQESVS 474


>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
           (UBP8) similar to ubiquitin-specific protease 8 partial
           sequence GI:11993469 [Arabidopsis thaliana]
          Length = 622

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 306 TSLPNVTKQGTRVPQPSIS 250
           +SLP V+K GT+ PQ S+S
Sbjct: 456 SSLPEVSKSGTKRPQESVS 474


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,885
Number of Sequences: 28952
Number of extensions: 244982
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)