Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n14f
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21080.1 68415.m02502 expressed protein                             27   7.2  
At3g57380.1 68416.m06387 expressed protein contains Pfam domain,...    27   9.5  
At2g41640.1 68415.m05145 expressed protein contains Pfam domain,...    27   9.5  

>At2g21080.1 68415.m02502 expressed protein
          Length = 414

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 385 YRTNLGTLKCIFWTFTCKYTKFLFFCLHKKF 477
           YRT +  L CI +  TC+     F  LHK F
Sbjct: 195 YRTGVFLLVCILFRLTCELQILRFRGLHKLF 225


>At3g57380.1 68416.m06387 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 504

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 524 LPCLFFRTVNYCGNIINEFQNKI 592
           +P +FF T  Y GN+ +EF + I
Sbjct: 183 VPAVFFSTGGYTGNVYHEFNDGI 205


>At2g41640.1 68415.m05145 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 500

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 524 LPCLFFRTVNYCGNIINEFQNKI 592
           +P +FF T  Y GN+ +EF + I
Sbjct: 181 VPAVFFSTGGYTGNVYHEFNDGI 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,569,919
Number of Sequences: 28952
Number of extensions: 219029
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)