Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n12r
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   6.5  
SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.6  
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)                27   8.6  

>SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 194 NWDTPTSRARTALTRLPAGAVYLTLTACELAVAARVTT 307
           +WD   S A   L   P G+  + L AC+L    R TT
Sbjct: 35  SWDALVSLAEDDLKGCPRGSSRVDLQACKLGTGRRFTT 72


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 118 RISLQCTNLGTLRLICPPVKHMC 50
           R+ +  T + T RL CPP K +C
Sbjct: 32  RLQIVFTQVVTARLTCPPTKFLC 54


>SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 313 ELRCDSCCDSQLAGCQREVHGA 248
           E+ CDSC DSQ    + EV+G+
Sbjct: 122 EMICDSCMDSQQVITKEEVNGS 143


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 166 PAPDKADGRELGHPYFPGS 222
           P PD AD +E   PYFP S
Sbjct: 353 PLPDSADPKENTKPYFPQS 371


>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
          Length = 635

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 298 SCCDSQLAGCQREVHGARR*TRQGRPSPGSRGV 200
           SC   +L GC R+  G+ R     +PS  SR V
Sbjct: 435 SCATGRLPGCTRKPSGSSRRVFSRKPSGSSRRV 467


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,161
Number of Sequences: 59808
Number of extensions: 239556
Number of successful extensions: 806
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)