Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n12r
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   1.9  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   1.9  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U53344-2|AAP13769.1|  301|Caenorhabditis elegans Collagen protei...    27   5.7  
U53344-1|AAA96223.1|  363|Caenorhabditis elegans Collagen protei...    27   5.7  
U39644-6|AAO44907.1|  300|Caenorhabditis elegans Collagen protei...    27   5.7  
U39644-5|AAO44906.1|  300|Caenorhabditis elegans Collagen protei...    27   5.7  
U39644-4|AAA80357.2|  301|Caenorhabditis elegans Collagen protei...    27   5.7  
U39644-3|AAA80358.2|  301|Caenorhabditis elegans Collagen protei...    27   5.7  
AF039720-3|AAB96697.1|  281|Caenorhabditis elegans Collagen prot...    27   5.7  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z70307-14|CAA94338.2|  409|Caenorhabditis elegans Hypothetical p...    27   10.0 
U41624-5|AAF99941.1|  314|Caenorhabditis elegans Collagen protei...    27   10.0 
AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc ...    27   10.0 

>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 187 GRELGHPYFPGSDGPDASTG 246
           G E GHP  PG DGP+ + G
Sbjct: 54  GGEPGHPGAPGQDGPEGAPG 73


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 187 GRELGHPYFPGSDGPDASTG 246
           G E GHP  PG DGP+ + G
Sbjct: 54  GGEPGHPGAPGQDGPEGAPG 73


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 187 GRELGHPYFPGSDGPDASTG 246
           G E GHP  PG DGP+ + G
Sbjct: 54  GGEPGHPGAPGQDGPEGAPG 73


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 112 SLQCTNLGTLRLICPPVKHMC 50
           + +CT++G+++L CP V  +C
Sbjct: 426 NFECTSIGSMQLCCPTVASVC 446


>Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical
           protein C44C10.1 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 166 PAPDKADGRELGHPYFPGSDGPD 234
           P  D  DG + G P  PG+DGPD
Sbjct: 119 PGQDGEDGSD-GQPGAPGNDGPD 140


>Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical
           protein M18.1 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 199 GHPYFPGSDGPDASTGGRRVPHVDSLRAGCRSTS 300
           GHP  PG+ GP  + G    P  D+    C S S
Sbjct: 248 GHPGQPGNAGPPGTPGAAGQPGGDAAYCPCPSRS 281


>U53344-2|AAP13769.1|  301|Caenorhabditis elegans Collagen protein
           166, isoform b protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 166 PAPDKADGRELGHPYFPGSDGPD 234
           P  D  DG + G P  PG+DGPD
Sbjct: 120 PGSDGEDGAD-GQPGAPGNDGPD 141


>U53344-1|AAA96223.1|  363|Caenorhabditis elegans Collagen protein
           166, isoform a protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 166 PAPDKADGRELGHPYFPGSDGPD 234
           P  D  DG + G P  PG+DGPD
Sbjct: 182 PGSDGEDGAD-GQPGAPGNDGPD 203


>U39644-6|AAO44907.1|  300|Caenorhabditis elegans Collagen protein
           170 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 166 PAPDKADGRELGHPYFPGSDGPD 234
           P  D  DG + G P  PG+DGPD
Sbjct: 119 PGQDGEDGAD-GQPGAPGNDGPD 140


>U39644-5|AAO44906.1|  300|Caenorhabditis elegans Collagen protein
           169 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 166 PAPDKADGRELGHPYFPGSDGPD 234
           P  D  DG + G P  PG+DGPD
Sbjct: 119 PGQDGEDGAD-GQPGAPGNDGPD 140


>U39644-4|AAA80357.2|  301|Caenorhabditis elegans Collagen protein
           168 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 166 PAPDKADGRELGHPYFPGSDGPD 234
           P  D  DG + G P  PG+DGPD
Sbjct: 120 PGQDGEDGAD-GQPGAPGNDGPD 141


>U39644-3|AAA80358.2|  301|Caenorhabditis elegans Collagen protein
           167 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 166 PAPDKADGRELGHPYFPGSDGPD 234
           P  D  DG + G P  PG+DGPD
Sbjct: 120 PGQDGEDGAD-GQPGAPGNDGPD 141


>AF039720-3|AAB96697.1|  281|Caenorhabditis elegans Collagen protein
           54 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 169 APDKADGRELGHPYFPGSDGPDASTG--GRRVPHVD 270
           AP K   R  G P  PG +GP    G  G++ PH D
Sbjct: 190 APGKNGNRGSGAPGAPGPEGPIGEPGKDGQQGPHGD 225


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 127 GTKRISLQCTNLGTLRLICPPVKHMC 50
           G    + QCT +GTL+  CP    +C
Sbjct: 256 GCNNPNYQCTTMGTLQQCCPTYLFIC 281


>Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.2 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 187 GRELGHPYFPGSDGPDASTGGRRVPHVDSLRAGC 288
           G   G P   GSDG   + GGR +P  D+    C
Sbjct: 252 GGRPGQPGNRGSDGHPGTPGGRGLPGPDAAYCAC 285


>Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical
           protein M04B2.1 protein.
          Length = 870

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 106 EVISSSCRVSELESDES*TDPAPDKAD 186
           E  S+   V E++  E  TDP+PD +D
Sbjct: 70  EAASADVEVIEIDDTEESTDPSPDGSD 96


>Z70307-14|CAA94338.2|  409|Caenorhabditis elegans Hypothetical
           protein C39E9.12 protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 235 RQGRPSPGSRGVPVRDRPPCRGRGRFNFRHS 143
           R G P       PVR R P  GR RF   H+
Sbjct: 156 RPGMPIENRGITPVRQRAPSSGRDRFAMIHA 186


>U41624-5|AAF99941.1|  314|Caenorhabditis elegans Collagen protein
           174 protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 199 GHPYFPGSDGPDASTGGRRVP 261
           G+P  PG+DGP  + GG+  P
Sbjct: 188 GNPGAPGTDGPAGNKGGQGPP 208


>AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc
           finger protein protein.
          Length = 870

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 106 EVISSSCRVSELESDES*TDPAPDKAD 186
           E  S+   V E++  E  TDP+PD +D
Sbjct: 70  EAASADVEVIEIDDTEESTDPSPDGSD 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,530,592
Number of Sequences: 27780
Number of extensions: 179957
Number of successful extensions: 783
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)