Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n10r
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 28 0.77
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.1
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 25 5.5
SPAC167.04 |pam17||presequence translocase-associated motor subu... 25 5.5
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 25 7.2
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 25 7.2
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 7.2
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 7.2
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 25 7.2
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 7.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.5
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.77
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 191 VLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVLTSS 69
+L T + N+ PTS S+ SSKS+ T T+ T T++
Sbjct: 587 LLRTHSLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATTT 627
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = -2
Query: 266 NT*SSSVGTGMLRQS*CETFPGGRSVLTTENASTNLFPPTSWSNQSSKSTMH--TVTSKS 93
+T SSS + + + S LT+ ++S++ P S S+ SS + H + +SKS
Sbjct: 357 STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSS--RPASSSSHSSSLSSHKSSSSSKS 414
Query: 92 GTNVLTSSFFH 60
+ ++S+F+H
Sbjct: 415 SSAPVSSAFYH 425
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -2
Query: 257 SSSVGTGMLRQS*CETFPGGRSVLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVL 78
+SSV T + + S + + S++ P+S S+ S S+ ++S S ++ L
Sbjct: 7 TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66
Query: 77 TSSFF 63
+SS F
Sbjct: 67 SSSSF 71
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = -1
Query: 192 GTYYGERVYKLIPPDQLVEPIFQEYYAHSDIKEWNKRAN 76
G+Y E+ Y+ PP++ + + ++ + SD+++ +KR +
Sbjct: 122 GSYNEEKYYQ--PPEKFEQSLNEKCFHRSDVQKLSKRCD 158
>SPAC167.04 |pam17||presequence translocase-associated motor subunit
Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 285 LAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKL 160
+A R++E+ + L +NR P + YYGE++Y L
Sbjct: 135 IAAREQEFYRHLVKNRVTPQMESYSNP---IPDYYGEKIYSL 173
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 423 FSGYTMFAGFIGMTIGSIYLYNITY 349
F+GY + GF+G IG + TY
Sbjct: 136 FNGYAILFGFVGAWIGFFLFASDTY 160
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 460 LVAPRRGQILFFSHLKSFSHLWLD 531
L R+GQ+ FF + FSH D
Sbjct: 91 LEVKRKGQMFFFESFRKFSHAEAD 114
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 327 IEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDV 208
+ +RS + + + AE+D EY QL+ R+A + +D+
Sbjct: 178 LNLRS-HLQVQEQVYAEKDHEYSLQLQSYREAAEKAKQDI 216
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 174 RVYKLIP-PDQLVEPIFQEYYAHSDIKEW 91
R ++P P+++V + YY HS EW
Sbjct: 1277 RFLAMMPHPERVVLKVANSYYPHSKASEW 1305
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 142 QLVGGNKFVDAFSVVSTDLPPGNV 213
Q++ G KFV + V+ DL P N+
Sbjct: 124 QILRGLKFVHSAGVIHRDLKPSNI 147
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 375 SIYLYNITYKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVP 205
S+Y +IT KR+L ++ +A +Y L + K NR E ++ DVP
Sbjct: 182 SLYRGDITAKRLLSGQVAQPAAADPLYRVLNS-------KIFNLNRGDEGDIYNDVP 231
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 194 SVLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVLTSSFFHKLSRFIKY 36
SV +T T + PT+ SN ++ T+ +TS S ++ + ++ + I Y
Sbjct: 179 SVSSTLTYHTPIASPTTSSNSDNEYTVDVITSSSLSSFVITNVDSTTTSVINY 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,357
Number of Sequences: 5004
Number of extensions: 47532
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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