Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n10f
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25306| Best HMM Match : GRIM-19 (HMM E-Value=0.00062)               32   0.38 
SB_35974| Best HMM Match : PUF (HMM E-Value=0.00065)                   29   2.0  
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             29   2.7  
SB_28665| Best HMM Match : TGF_beta (HMM E-Value=1.2e-22)              29   3.6  
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)          28   6.2  
SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_25306| Best HMM Match : GRIM-19 (HMM E-Value=0.00062)
          Length = 100

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 283 LKQLRRNRDAEAELMRDVPGWEVG-TYYGERVYKLIPPDQLV 405
           L+ L+ N + EA +M+DV GW VG + Y    +    P+Q++
Sbjct: 59  LRGLKENEELEALIMKDVKGWNVGESVYHTNKWVTPMPEQVL 100


>SB_35974| Best HMM Match : PUF (HMM E-Value=0.00065)
          Length = 422

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 240 HFSGSHLNLILKNSLVSYVIEIYRTNCHSNEPRKHSISAEIR 115
           H S   L L+  N++ S+VIE Y  +    E RKH +  ++R
Sbjct: 291 HLSQDELVLVSCNAMGSHVIEAYMKSKTIGEKRKHKMINKLR 332


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 10  KIQPKMAEAFQVAKKQDLP-PPGGYKPIPFKRIPAKSYFSGYTMFAG 147
           +I     E+ +VA  Q LP  PG  +P P +R+PA    SG T  AG
Sbjct: 140 RINRAKKESLRVAAAQQLPVAPGPSEPQPGRRLPADDAASG-TASAG 185


>SB_28665| Best HMM Match : TGF_beta (HMM E-Value=1.2e-22)
          Length = 350

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 165 NCHSNEPRKHSISAEIRFSGDPFKWNWLVAPRR 67
           +C      +     E+    + F WNW++AP+R
Sbjct: 249 DCDPYSHERRCCRYELTVDFEKFSWNWIIAPKR 281


>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1101

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 349 PPTRERLASALPQHPCSYGAALGIPYLFLPVEQGISP 239
           P  RE+L   + Q PC  GA   I +L+  V++  SP
Sbjct: 135 PKGREKLKHLVEQPPCLCGAGKDISFLYDAVQEKQSP 171


>SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 455 TNVLTSSFFHKLSRFIKYCYVKKGICIEAIIG 550
           TN++TSS+ H LS  I    +  G+CI   +G
Sbjct: 465 TNMITSSYAHVLSDEIHKAAMDAGVCIGMELG 496


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
 Frame = +1

Query: 100 RIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYKRILKDEIEMRSAKMAIYPAL---LAER 270
           R P    ++  +   GF G T+GS+ L     K I K +I      +A +P L   L E 
Sbjct: 226 RAPGSPPYTVLSFTGGFHGRTLGSLTL--TRSKAIHKVDIPSFDWPVATFPKLKYPLEEH 283

Query: 271 DREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKLIPPDQLVE 408
            RE   + +R  D    +     G          V K+I  D L+E
Sbjct: 284 QRENAAEEQRCLDEPFRIFNTWMGDPNKMILLREVLKVIRKDNLIE 329


>SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)
          Length = 802

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 367 LRSKYRPPTRE--RLASALPQHPCSYGAALGI 278
           +R  YR P  E  + A A+P  P SYG AL +
Sbjct: 333 IRGIYRKPLSEFRKTAPAIPAQPISYGQALDL 364


>SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 344 GRSVLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVLTSSFFHKLSRFI 502
           G  VL T  +  +   PTSW+      T+H + S++    L    FH  +R I
Sbjct: 708 GELVLITRRSFNSTGTPTSWAPLWPVPTVHIIRSET-VRALKYKHFHHSARII 759


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,060,194
Number of Sequences: 59808
Number of extensions: 361284
Number of successful extensions: 1007
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)