Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n10f
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.6  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   6.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 301 SYGAALGIPYLFLPVEQGISPF*RISSQS 215
           S+G     P   LP + G+SP+ R    S
Sbjct: 251 SFGRPKMTPQSLLPSQTGLSPYLRFGCLS 279


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = -1

Query: 324 QLCLSIPVPTELL*VFPISFCQ*SRVYRHFSGSHLNLILKNSLVSYVIEIYRTNC 160
           Q+  ++ +P   L  F   +C        +S   ++L+ K     Y+I+IY   C
Sbjct: 199 QVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCC 253


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = -1

Query: 324 QLCLSIPVPTELL*VFPISFCQ*SRVYRHFSGSHLNLILKNSLVSYVIEIYRTNC 160
           Q+  ++ +P   L  F   +C        +S   ++L+ K     Y+I+IY   C
Sbjct: 199 QVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCC 253


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 127 GYTMFAGFIGMTIG 168
           GYT+F GF+ +  G
Sbjct: 84  GYTLFKGFVHLGAG 97


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 361 SKYRPPTRERLASALPQHPCSYGAALGIPYLFLPVEQ 251
           + Y P  R        QH   YGAA+ +P     V+Q
Sbjct: 7   NSYIPDLRNGGVEHPHQHQQHYGAAVQVPQQTQSVQQ 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,317
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)