Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n10f
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04630.1 68414.m00458 expressed protein                             68   4e-12
At2g33220.1 68415.m04070 expressed protein                             67   7e-12
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00...    29   2.9  
At4g38840.1 68417.m05499 auxin-responsive protein, putative auxi...    28   5.1  
At3g01810.1 68416.m00123 expressed protein                             28   5.1  
At1g62350.1 68414.m07035 pentatricopeptide (PPR) repeat-containi...    28   5.1  
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa...    27   6.7  
At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p...    27   8.9  
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p...    27   8.9  
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro...    27   8.9  

>At1g04630.1 68414.m00458 expressed protein
          Length = 143

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
 Frame = +1

Query: 7   LKIQPKMAEAFQVAKKQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYN 186
           ++ +P MA    +   QD PPPGG+ P+ + R  + +  S   MF    G     +Y   
Sbjct: 6   IRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWGMYQVG 65

Query: 187 ITYK--RILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWEVG 354
              K  R LK+E    +A+  I P L AE D  ++ + ++  + EA++M+DVPGW+VG
Sbjct: 66  QGNKIRRALKEE--KYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKVG 121


>At2g33220.1 68415.m04070 expressed protein
          Length = 143

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
 Frame = +1

Query: 7   LKIQPKMAEAFQVAKKQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYN 186
           ++ +P MA    +   QD PPPGG+ P+ + R  + +  S   +F    G     +Y   
Sbjct: 6   IRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWGMYQVG 65

Query: 187 ITYK--RILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWEVG 354
              K  R LK+E    +A+ AI P L AE D  ++ + ++  + EA++M+DVPGW+VG
Sbjct: 66  QGNKIRRALKEE--KYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKVG 121


>At4g33290.1 68417.m04736 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 430

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 485 KLSRFIKYCYVKKGIC 532
           KL RFI YCY +K IC
Sbjct: 160 KLLRFIDYCYTEKHIC 175


>At4g38840.1 68417.m05499 auxin-responsive protein, putative
           auxin-inducible SAUR gene, Raphanus sativus,AB000708
          Length = 99

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 238 MAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYK--LIPPDQLVEP 411
           MAI    + +  ++ L+Q +    + +    DVP   +  Y GE+  K  ++P   L +P
Sbjct: 1   MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 412 IFQE 423
            FQ+
Sbjct: 61  SFQD 64


>At3g01810.1 68416.m00123 expressed protein
          Length = 921

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 14  SSQRWLKLFRWLKNKICPLRGATSQFHLKGSPLNLI 121
           S + W K FR    ++CPLRG+  +      P  LI
Sbjct: 628 SLELWKKAFREAHERLCPLRGSGHECGCLPIPARLI 663


>At1g62350.1 68414.m07035 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 225

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 237 FSGSHLNLILKNSLVSYVIEIYRTN 163
           F GSH++ +LK+ LVS + E  R N
Sbjct: 25  FIGSHVSRLLKSDLVSVLAEFQRQN 49


>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 401

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 359 TTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNV 463
           TT++ S   FPP S S+ +  ++MH   S + T V
Sbjct: 51  TTQHRSPTRFPPPSSSSSTPSASMHADNSPTPTIV 85


>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
           protein (SRL1) contains Pfam profile PF03371: PRP38
           family
          Length = 385

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 193 YKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRD 333
           Y R   DE++ RS + +      ++RD +  ++  R +D E E  RD
Sbjct: 224 YDRNGGDEVQQRSPRRSQSRDYYSDRDSDRQREREREKDRERERGRD 270


>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
           protein (SRL1) contains Pfam profile PF03371: PRP38
           family
          Length = 393

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 193 YKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRD 333
           Y R   DE++ RS + +      ++RD +  ++  R +D E E  RD
Sbjct: 232 YDRNGGDEVQQRSPRRSQSRDYYSDRDSDRQREREREKDRERERGRD 278


>At2g31900.1 68415.m03897 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF01843
           DIL domain, PF00612 IQ calmodulin-binding motif, PF02736
           myosin N-terminal SH3-like domain
          Length = 1556

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 387 NKFVDAFSVVSTDLPPGNVSHQLCLSI 307
           ++F+D F +++TD+P G+     C SI
Sbjct: 674 DEFLDRFVMLATDVPEGSDEKSACASI 700


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,197,282
Number of Sequences: 28952
Number of extensions: 258375
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)