Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n09r
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0) 164 6e-41
SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041) 93 3e-19
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 32 0.57
SB_59592| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_14840| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_8824| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_59014| Best HMM Match : CCT (HMM E-Value=6.4) 28 9.2
SB_44111| Best HMM Match : OAD_gamma (HMM E-Value=4.4) 28 9.2
>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
Length = 379
Score = 164 bits (399), Expect = 6e-41
Identities = 71/153 (46%), Positives = 103/153 (67%)
Frame = -2
Query: 745 DLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD 566
D D AGP V +AV+ Y+GW AG +DT K+K NNF+LGY++ DF +H+ V++
Sbjct: 226 DFDFAGPTVQGSAVVGYEGWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSAVNDASK 285
Query: 565 FGGSIYQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQ 386
F GSIY ++S L+ + W GS++T F G KY +D+D +L AK+NN S +GL Y Q
Sbjct: 286 FTGSIYHQISKNLEVAAQLNWATGSSNTSFQGGCKYDVDKDTTLRAKVNNNSHLGLAYTQ 345
Query: 385 KLRPGVTLTLSAAIDGQNFNAGGHKVGVALELE 287
+LR G+ T+S+ ID +N N GGHK+G++LE+E
Sbjct: 346 RLRDGIKATVSSHIDTKNLNQGGHKLGLSLEME 378
>SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)
Length = 187
Score = 92.7 bits (220), Expect = 3e-19
Identities = 39/86 (45%), Positives = 59/86 (68%)
Frame = -2
Query: 544 KVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVT 365
++S L+ + W GS++T F G KY +D+D +L AK+NN S +GL Y Q+LR G+
Sbjct: 101 EISKNLEVAAQLNWATGSSNTSFQGGCKYDVDKDTTLRAKVNNNSHLGLAYTQRLRDGIK 160
Query: 364 LTLSAAIDGQNFNAGGHKVGVALELE 287
T+S+ ID +N N GGHK+G++LE+E
Sbjct: 161 ATVSSHIDTKNLNQGGHKLGLSLEME 186
>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
Length = 842
Score = 31.9 bits (69), Expect = 0.57
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 336 CPSMAADNVRVTPGRSFCW*PRPMRDLLLILACRDASWSSAYFAPTPNNV--SAEPAVHF 509
CP A VRV+P RS W R + L+ AC + S +P P ++ S P +
Sbjct: 202 CPHHAVSGVRVSPPRSI-WCSRVLTTQYLVFACPHHAVSGVRVSP-PRSIWCSRVPTTQY 259
Query: 510 MLTP 521
+ +P
Sbjct: 260 LYSP 263
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 336 CPSMAADNVRVTPGRSFCW*PRPMRDLLLILACRDASWSSAYFAP 470
CP A +VRV+P RS W R + L+ AC + S +P
Sbjct: 171 CPHHAVSSVRVSPPRSI-WCSRVLTTQYLVFACPHHAVSGVRVSP 214
>SB_59592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 31.1 bits (67), Expect = 0.99
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = -3
Query: 447 KTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNQ 268
+ R+CT R T +P+ +YA+ C+LP T QV R PS+ Y Q
Sbjct: 21 RQRVCTTRPTHTPTGAYYQTNSYAK----RCVLPD-HLTRQQV--RTTRPSHMPTGAYYQ 73
Query: 267 T--YSCR*IHTVVTTKQRV 217
T Y+ R + T T QRV
Sbjct: 74 TILYANRCVLTEHLTCQRV 92
>SB_14840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -1
Query: 452 GPRRVSARQDQQQVPH---RSWLPTETTPRRNPYI 357
G R Q Q Q+PH +S +PT T P NP++
Sbjct: 88 GRARYHGGQSQSQIPHGQRKSQIPTWTAPEPNPHV 122
>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 314 QGWRCPRTRALENITKPTLVDKYILLSQPNSV 219
QGW + + NI PT+VD Y +L + +S+
Sbjct: 154 QGWSADNIK-MRNIDDPTVVDDYSILGEADSI 184
>SB_8824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -1
Query: 443 RVSARQDQQQVPH---RSWLPTETTPRRNPYI 357
R Q Q Q+PH +S +PT T P NP++
Sbjct: 4 RYHGGQSQSQIPHGQRKSQIPTWTAPEPNPHV 35
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 604 DFALHTNVDNGKDFGGSIYQKV 539
++ +H ++ G+D+GGS YQ+V
Sbjct: 394 EYGIHLSLTVGRDYGGSYYQQV 415
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = -1
Query: 434 ARQDQQQVPHRSWLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLV 255
ARQ++ + +R WL R I R+ Q + P + IT P ++
Sbjct: 855 ARQEEVKEAYRKWLDDFMKSAREKEIAENSRYASTQAATSAPYASPPPSPYQQITSPQVM 914
Query: 254 DKYILLSQPNSVYRE 210
LS P+S Y +
Sbjct: 915 QS--TLSPPDSQYNQ 927
>SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 347 HRWTELQCRWPQGWRCPRTRALENITKPTLVDK-YILLSQPNSVY 216
H++ +++ W+C R ++L + P +K Y QPN+++
Sbjct: 170 HKYKDIEFETRNKWQCLRHQSLSLLKVPNYSNKHYCAFCQPNNIF 214
>SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)
Length = 249
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 544 SGRLNRRNLYHCLRLCGEQSHQIGNLEQSCSWRTLLFVYQTGCVHQ 681
S R+NRR + H +R C + + G + C+W + T VH+
Sbjct: 157 STRMNRR-IRHLVRRCCKLGAKGGEMGFDCNWDRFTALQYTNIVHR 201
>SB_44111| Best HMM Match : OAD_gamma (HMM E-Value=4.4)
Length = 305
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -1
Query: 470 WSEVRAG--PRRVSARQDQQQVPHRSWLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCP 297
W E RA PR D+ ++ T+ T RR + V C+ + L +GWR P
Sbjct: 85 WRESRAPNHPRPDLNTLDESKLEGAWQSGTDLTERRKRHFVSCNTLSRLSLASRRGWRGP 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,513,896
Number of Sequences: 59808
Number of extensions: 561502
Number of successful extensions: 1480
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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