Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n09f
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ... 50 1e-06
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34... 44 7e-05
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34... 32 0.32
At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 2.2
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot... 28 5.2
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 28 5.2
At4g25920.1 68417.m03727 expressed protein contains Pfam profile... 27 6.8
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 27 6.8
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 27 9.0
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 27 9.0
>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
[Solanum tuberosum] GI:515360; contains Pfam profile
PF01459: Eukaryotic porin
Length = 274
Score = 49.6 bits (113), Expect = 1e-06
Identities = 38/155 (24%), Positives = 76/155 (49%)
Frame = +3
Query: 114 APPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKF 293
+P +AD+GKKA D+ +K Y F K L S +G EF + T ++ FG +S+ +
Sbjct: 4 SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA--TGLKKDDFFFGDISTLY 60
Query: 294 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDT 473
K K ++ ++++T +T+++ + + K + K+GKL + +
Sbjct: 61 --KGQNTIVDLKIDSHSSVSTKVTLKNLLPSA-KAVISFKIPDH---KSGKLDVQYVHPH 114
Query: 474 VAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQF 578
+N+++ L+ P++D++A + Q G F
Sbjct: 115 ATLNSSIGLN-PTPLLDLSATIGSQNVCLGGEVSF 148
>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 276
Score = 44.0 bits (99), Expect = 7e-05
Identities = 37/141 (26%), Positives = 68/141 (48%)
Frame = +3
Query: 117 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 296
P + D+GKKA D+ ++ Y+ K + T S SGV TS T+ ++ G +++++
Sbjct: 5 PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS--TALKKGGVHAADVATQYK 61
Query: 297 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 476
K+ F K +TD+++ T +T+ + I K + P + KL+ + +D
Sbjct: 62 YKN--ALFDVKIDTDSSVLTTVTLTE-ILPSTK-AIASFKVPD--YNSAKLEVQYFHDHA 115
Query: 477 AVNTNLDLDLAGPVVDVAAVL 539
V L P++D+ A L
Sbjct: 116 TVTAAAALK-QNPLIDITATL 135
>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 226
Score = 31.9 bits (69), Expect = 0.32
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 117 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSN 251
P +AD+GK A D+ ++ Y K + T S SGV TS N
Sbjct: 5 PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTSTALKN 48
>At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to desacetoxyvindoline
4-hydroxylase [Catharanthus roseus][GI:1916643],
flavonol synthase 1 [SP|Q96330]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 361
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -2
Query: 388 PAAILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVN-STPD 215
PA + ++V V + +K P + LEERL F E IP+++ S PD
Sbjct: 13 PAEVTDFVVYKGNGVKGLSETGIKALPEQYIQPLEERLINKFVNETDEAIPVIDMSNPD 71
>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
similar to serine-type carboxypeptidase (SP:P55748)
[Hordeum vulgare]
Length = 479
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 317 SQAIVFHCKFGGKAAKNLSAFLVGGDSAGEFNTRLAL 207
S+AIV H + K + NL ++VG +F+ RL L
Sbjct: 196 SEAIVKHNQGSDKNSINLKGYMVGNGLMDDFHDRLGL 232
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 105 TDMAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGK 266
T ++ P ++ G+ A + K +FG LDL K +SG+ +S ITS SGK
Sbjct: 268 TSLSAPAISNGGRDAASL--KTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGK 321
>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 390
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 120 PYYADLGKKANDVFSKGYHFGVFKLDLKT 206
P + G K N ++ GY+FGV+ L KT
Sbjct: 330 PASSSPGLKPNCIYFVGYNFGVYDLTTKT 358
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 445 FPVLVPVCGAKVPSRVTLRPAAILSWIVMS-VANVLSVFHFSVKVKP*SFTANLE 284
FP+ V A +P T PA + W+V+S + VL + + + + +F A +E
Sbjct: 431 FPLKRAVADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVE 485
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 327 KWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQT 428
+W D+ TDI++ D I G++ TF P T
Sbjct: 24 RWTYDDVTVTDISLVDYI--GVQAAKHATFVPHT 55
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 327 KWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQT 428
+W D+ TDI++ D I G++ TF P T
Sbjct: 24 RWTYDDVTVTDISLVDYI--GVQAAKHATFVPHT 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,541,299
Number of Sequences: 28952
Number of extensions: 252406
Number of successful extensions: 753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -