Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n08r
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 29 0.98
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 27 3.0
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.0
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 3.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.9
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 27 3.9
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 26 5.2
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 5.2
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 6.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.9
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 25 9.1
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 9.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.1
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 28.7 bits (61), Expect = 0.98
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 731 MTSPDASTCSMATGTPQNATSSTITVNTN 645
M+SP T SM +G QN SST +++ N
Sbjct: 12 MSSPSLETDSMESGQQQNMVSSTPSIDMN 40
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 377 LYKLVPNSWVYFDNLRGRTVNPLRETFVRP 288
+YK W+YF N V+ LRE + P
Sbjct: 443 IYKEKKRKWIYFTNKSPEMVSYLREKYFTP 472
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 764 SSSRCTSTGP*MTSPDASTCSMATGTPQNATSSTITVNTN 645
SS T+ G ++P + S+ G P + T + IT N+N
Sbjct: 69 SSPPSTAPGSAGSTPKTTPVSLNAGVPPSNTGANITTNSN 108
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -1
Query: 137 NNKL--TPIKTRFVIKFTVICLNIEMFITFSL 48
NNKL P TR+++ T + L+ F+TF L
Sbjct: 511 NNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPL 542
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -1
Query: 770 STSSSRCTSTGP*MTSPDAST-CSMATGTPQNATSST 663
S+SSSR +S+ +T+ +ST S T TP +++SST
Sbjct: 228 SSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSST 264
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -1
Query: 773 ESTSSSRCTSTGP*MTSPDAST---CSMATGTPQNATSSTITVNTNP 642
ESTSS+ ST +SP ST C+ +T P SS+++ P
Sbjct: 90 ESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITP 136
Score = 26.2 bits (55), Expect = 5.2
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +2
Query: 467 SSLSIHNRDSEVTFMTDSLF*IPSRPCTSLSNLGLGASTVSRRNPTTANPSGWPTAVSKD 646
SS SI S + S S + SN+ +STVS PTT+ PS + T+
Sbjct: 653 SSTSISTSSSSTATSSTSF---ASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFITS 709
Query: 647 SYL 655
S L
Sbjct: 710 SSL 712
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = -1
Query: 317 NPLRETFVRPRDTRRA-TPLFTLSKLGQNSENN*FSAINETRTRT 186
+PL+ T + P+ TRR+ TP+ +LS G++S S+ N +RTR+
Sbjct: 529 SPLQNTVISPQPTRRSRTPIRSLS--GRSSV---ASSRNSSRTRS 568
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 432 SPCKSRSCRFEGLLCPSII 488
SP +++ CR GL C SII
Sbjct: 380 SPSRNKKCRVTGLQCASII 398
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 764 SSSRCTSTGP*MTSPDASTCSMATGTPQNATSSTITVN 651
SS+ ST P SP AST +T N +SS+ + N
Sbjct: 390 SSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSN 427
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = +1
Query: 253 NVNNGVARRVSLGRTNVSLNGLTVRPLKLSK*TQLFGTNLYRFLVN 390
N++NG +++ LG+ ++ + + ++ + T + NLY +N
Sbjct: 20 NIDNGKRKKLELGKDMEDVHDIASKEMEEHETTPIISQNLYLDTIN 65
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 770 STSSSRCTSTGP*MTSPDASTCSMATGTPQNATSSTITVNTN 645
STS +S P +TS + T S+ +ATSS+ T T+
Sbjct: 892 STSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETS 933
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 690 YAAECHFVHYNSKYESLETAVGHPDGLAVV-GFLLE 586
+ A+C FV++ ++ + A PDG V+ GF L+
Sbjct: 245 HRAKCAFVNFKTRSSAEIAAAASPDGNVVIEGFRLK 280
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 241 VKTLK--TTNFLRSMKQELEQCNDVVRVLC-LCERFVL 137
VK+L T+ LRS + L+ DV+ VLC L + F+L
Sbjct: 583 VKSLNFHATSLLRSSRNTLDLHKDVLIVLCQLSQNFIL 620
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 758 SRCTSTGP*MTSPDASTCSMATGTPQNATSSTITVNT 648
S S+ +TS ST + TG+ + SST+T +T
Sbjct: 152 SASDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHT 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,223
Number of Sequences: 5004
Number of extensions: 70411
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -