Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n08r
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)               99   2e-21
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   2e-20
SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09)        64   1e-10
SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)         49   4e-06
SB_54473| Best HMM Match : DLIC (HMM E-Value=0)                        41   0.001
SB_16664| Best HMM Match : Carb_anhydrase (HMM E-Value=1.7e-05)        34   0.11 
SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_23595| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_43773| Best HMM Match : TPR_1 (HMM E-Value=0.26)                    29   3.2  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_50120| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_12059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_43285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)                      28   9.6  

>SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)
          Length = 291

 Score =   99 bits (238), Expect = 2e-21
 Identities = 59/169 (34%), Positives = 79/169 (46%), Gaps = 8/169 (4%)
 Frame = -3

Query: 768 YIFEQMHFHWSVDDFTGCEHVLDGHGYAAECHFVHYNSKYESLETAVGHPDGLAVVGFLL 589
           Y   Q HFH    D  G EH + G  Y  E H VHYN KY +  +A G  DGLAV+  L 
Sbjct: 116 YRLAQFHFHVGSSDIQGSEHHIHGVKYPLEMHLVHYNDKYPNASSAQGLLDGLAVISVLF 175

Query: 588 ETVDAPNPRFDRLVQGLEGIQKRE---SVMNVTSESLLWMDREDLQIGNYVTYKGSLTTP 418
           E+    NP  + ++  L+    ++   +V NV    ++  D E      +  Y GSLTTP
Sbjct: 176 ESSSTDNPALNEIIDNLQNASYKDEEITVQNVPVGKIIPTDTE-----KFYRYNGSLTTP 230

Query: 417 PYTECVTWIIYEKPVQIGSEQLGLLRQLEGPDSQ-----PIERNVRPTQ 286
           P  E V WI+ +K   I  +QL   R +     Q      +  N RPTQ
Sbjct: 231 PCFETVKWIVLKKTASISEKQLRQFRSVFSTSRQATKPNSLVDNFRPTQ 279


>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
 Frame = -3

Query: 768 YIFEQMHFHWSVDDFTGCEHVLDGHGYAAECHFVHYNSKYESLETAVGHPDGLAVVGFLL 589
           Y   Q H HW   +  G EH++DG  +A   H V YN+KY ++  AV   DGLAVVG LL
Sbjct: 515 YSTVQFHLHWGSKNEQGSEHLIDGKAFAGAIHIVSYNTKYPNISAAVDKSDGLAVVGILL 574

Query: 588 ETVDAPNPRFDRLVQGLEGIQKRESVMNVTSESLLWMDREDL--QIGNYVTYKGSLTTPP 415
           + V   +    + ++ +  + K    +N + E        DL     N+  Y+GSLTTP 
Sbjct: 575 K-VGTESAALKKFMENIGSVTK----VNTSDEFAQPAKLGDLLPSNKNFYRYQGSLTTPG 629

Query: 414 YTECVTWIIYEKPVQIGSEQLGLLRQLEGPDS-QPIERNVRPT 289
             E VTW +   P+ +   QL +LR L+  D    I+ N R T
Sbjct: 630 CQESVTWSVMANPITVSEAQLAILRGLKQKDGVAVIQDNFRNT 672


>SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09)
          Length = 252

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = -3

Query: 756 QMHFHWSVDDFTGCEHVLDGHGYAAECHFVHYNSKYESLETAVGHPDGLAVVGFLLE 586
           Q H H   DD  G EH++DG   AA  H V+YN+KY  + TA    DGLAV+G +LE
Sbjct: 196 QFHMHLGEDDTRGAEHLIDGQRNAACIHIVNYNTKYPDISTAANKSDGLAVIGVILE 252


>SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
 Frame = -3

Query: 771 EYIFEQMHFHWSVDDFTGCEHVLDGHGYAAECHFVHYNSK-YESLETAVG--HPDGLAVV 601
           +Y F Q HFHW  D+  G EH +DG  Y +E H VHYNS  Y+   +A+   + DGL V+
Sbjct: 10  KYKFAQFHFHWGKDEKEGSEHRVDGKMYPSEMHIVHYNSDLYKDAASAMSSDNKDGLCVL 69

Query: 600 GFLLE--TVDAPN 568
           G  LE  +V  PN
Sbjct: 70  GVFLEGSSVAVPN 82


>SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)
          Length = 338

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -3

Query: 768 YIFEQMHFHWSVDDFTGCEHVLDGHGYAAECHFVHYNSKYESLETAVGHPDGLAVV 601
           Y  E + FH+  +D+ G EH +DG  +  E   + +N+KY ++  A    DGL VV
Sbjct: 102 YQLETVRFHFGCNDWLGSEHAVDGRRHPGEIQMIFHNTKYSNVSDAADKSDGLLVV 157



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = -3

Query: 450 YVTYKGSLTTPPYTECVTWIIYEKPVQIGSEQLGLLRQLE 331
           Y +YKGS T P   E V WII ++PV I  +++  LR+LE
Sbjct: 176 YYSYKGSQTAPACHESVRWIIVKQPVDIYRDEMAYLRRLE 215


>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
          Length = 1401

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = -3

Query: 453 NYVTYKGSLTTPPYTECVTWIIYEKPVQIGSEQLGLLRQLEGPD 322
           ++  YKGSLTTPP  E VTW + +    I  +QL  LR +   D
Sbjct: 740 DFFRYKGSLTTPPCYESVTWTVMKTKTTISHDQLMKLRSIMEKD 783


>SB_16664| Best HMM Match : Carb_anhydrase (HMM E-Value=1.7e-05)
          Length = 134

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 771 EYIFEQMHFHWSV-DDFTGCEHVLDGHGYAAECHFVH 664
           EY    + FHW+  ++  G EH++D  G+A E + +H
Sbjct: 90  EYQLAMIKFHWAATEESAGSEHMIDSQGHAIEVNALH 126


>SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 770 STSSSRCTSTGP*MTSPDASTCSMATGTPQNATSSTITVNTNPW 639
           ST++S  TST    T+   +T +  T T  + T++TIT   + W
Sbjct: 53  STTTSTTTSTTNTSTTTSTTTSTTNTSTTTSTTTTTITYKRDKW 96


>SB_23595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/85 (27%), Positives = 33/85 (38%)
 Frame = -2

Query: 625 PSRWIGCGRIPPGDCRRSQPEVR*TSTRSGGDSEEGVSHECYFRIPIMDGQRRPSNRQLR 446
           PS  I CG +P      + PE R  ++      E+  SH+ Y R        + SN    
Sbjct: 97  PSEDIYCGELPYHIFNNTSPETRSNTSERESLGEKIHSHDLYGRSLFPQAAEKQSNETRM 156

Query: 445 DLQGLPDDTALHRVCHLDHLRETCT 371
           D    P+     +VC  +    TCT
Sbjct: 157 D--SWPEARDEKQVCSNNLPDSTCT 179


>SB_43773| Best HMM Match : TPR_1 (HMM E-Value=0.26)
          Length = 419

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 495 ESLLWMDREDLQIGNYVTYKGSLTTPPYT 409
           E+  WM+    ++G+ V Y+GSL  P YT
Sbjct: 183 EARQWMEESLKRLGSSVRYRGSLQKPGYT 211


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 770 STSSSRCTSTGP*MTSPDASTCSMAT--GTPQNATSSTITVNTNP 642
           STS+S  T+T P  T+P  +T    T   T  +A ++T    T P
Sbjct: 775 STSTSAATTTAPPTTAPPTTTKEPTTDASTSTSAATTTAPATTTP 819


>SB_50120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 669 VHYNSKYESLETAVGHPDGLAVVGFLLETV---DAPNPRF 559
           V + + Y S+E A    DGL VVG  L+ +   ++ NP F
Sbjct: 2   VFFKTVYGSVEKAADKTDGLTVVGVFLKKISLLNSVNPSF 41


>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 594 LLETVDAPNPRF--DRLVQGLEGIQKRESVMNVTSESLLWMDRE 469
           L+ET  A N R    R+V  LEG++ + + +  +S + +W D+E
Sbjct: 666 LIETCTALNMRILNGRVVGDLEGLRYQNNDIKESSVNKMWFDKE 709


>SB_12059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 399 TWIIYEKPVQIGSEQLGLLRQL 334
           TWI+Y KP ++ +E  G L  L
Sbjct: 160 TWIVYNKPKELTNEHAGFLMAL 181


>SB_43285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 519 PSSESPPDLVLVYRTSGWERRQSPGGIR 602
           P   SPP   L YRTS   R  SP G R
Sbjct: 68  PEIPSPPYQELAYRTSRQSRESSPSGGR 95


>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
          Length = 800

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 399 TWIIYEKPVQIGSEQLGLLRQL 334
           TWI+Y KP ++ +E  G L  L
Sbjct: 4   TWIVYNKPKELTNEHAGFLMAL 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,957,350
Number of Sequences: 59808
Number of extensions: 568491
Number of successful extensions: 1689
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)