Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n08r
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 634 RLQGFVFTVIVDEVAFCGVPVAIEHVLASGEVIYGPV 744
           RL   +  +  DEV   G PV I   + SGEV+ G +
Sbjct: 488 RLALDMMDLAADEVQIDGEPVKITIGIHSGEVVTGVI 524


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 634 RLQGFVFTVIVDEVAFCGVPVAIEHVLASGEVIYGPV 744
           RL   +  +  DEV   G PV I   + SGEV+ G +
Sbjct: 488 RLALDMMDLAADEVQIDGEPVKITIGIHSGEVVTGVI 524


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 438 KGSLTTPPYTECVTWIIYEKPVQIGSEQLGLLRQLEGPD---SQPIERNV 298
           K + T    T+C  W I  +  Q    + GL RQ E  D   S PI +N+
Sbjct: 175 KRTATITAATDCQLWAIDRQCFQTIMMRTGLSRQAEYTDFLKSVPIFKNL 224


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 725 SPDASTCSMATGTPQNATSSTITVNTN 645
           S   STCS+A    QN    T + N N
Sbjct: 513 STATSTCSLAVAKQQNQVPLTSSSNVN 539


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 471 EDLQIGNYVTYKGSLTT 421
           E LQ+G YVT  G + +
Sbjct: 438 ERLQVGQYVTVNGDVVS 454


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +3

Query: 402 HTRCRAVSSGSPCKSRSCRFEGL 470
           H RC   +   P   R+C   GL
Sbjct: 153 HPRCAVNNYNDPSNVRNCELVGL 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,539
Number of Sequences: 438
Number of extensions: 5656
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)