Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n08f
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            26   0.33 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    24   1.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    24   1.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   1.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.4  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 244 KFKGYWDSNANAILLNNGSTAYFTFN 321
           K   +WD+ +N I  + G + +  FN
Sbjct: 401 KIDNWWDNGSNQIAFSRGCSGFVAFN 426


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 106 FSLSCCPSDREYYII 62
           F   CCPSDR  Y I
Sbjct: 352 FCPDCCPSDRMVYFI 366


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 106 FSLSCCPSDREYYII 62
           F   CCPSDR  Y I
Sbjct: 352 FCPDCCPSDRMVYFI 366


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 504 RLQGFVFTVIVDEVAFCGVPVAIEHVLASGEVIYGPV 394
           RL   +  +  DEV   G PV I   + SGEV+ G +
Sbjct: 488 RLALDMMDLAADEVQIDGEPVKITIGIHSGEVVTGVI 524


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 106 FSLSCCPSDREYYII 62
           F   CCPSDR  Y I
Sbjct: 352 FCPDCCPSDRMVYFI 366


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 504 RLQGFVFTVIVDEVAFCGVPVAIEHVLASGEVIYGPV 394
           RL   +  +  DEV   G PV I   + SGEV+ G +
Sbjct: 488 RLALDMMDLAADEVQIDGEPVKITIGIHSGEVVTGVI 524


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 413 SPDASTCSMATGTPQNATSSTITVNTN 493
           S   STCS+A    QN    T + N N
Sbjct: 513 STATSTCSLAVAKQQNQVPLTSSSNVN 539


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 256 YWDSNANAILLNNGSTAYFTFNDASVRPTLSGGPLIGE 369
           YW S   + +LNN +  +    ++  +  LS   ++GE
Sbjct: 348 YWISTTTSFVLNNRAGRFLILTESDTK--LSSQGILGE 383



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -1

Query: 515 WPTAVSKDSYLLL*WTKWHSAAYPWPSSTCSHPVKSSTDQW 393
           W + +   S++ L WT  H +  P      ++    S D W
Sbjct: 85  WTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIW 125


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 300 YCIFHVQRRVSETDPQRGPP 359
           YC+ ++    S+T P+  PP
Sbjct: 325 YCLVNIVLGDSDTPPKPAPP 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,482
Number of Sequences: 438
Number of extensions: 3990
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)