Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n06f
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    29   0.42 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    28   0.97 
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   1.7  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   3.9  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   3.9  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   9.1  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   9.1  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   9.1  

>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 202 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 333
           P+  T  +L      ++IL T+  SL   + VSP  Y +FT LL
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = -3

Query: 629 KPAQNFVISHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYY 450
           KP  +   S+D I  L+     F   H+E   +    +Y   L      E+  +N  GYY
Sbjct: 560 KPPISADASYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYY 619

Query: 449 DTLLDNSTL 423
           D   D S L
Sbjct: 620 DVGKDESYL 628


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 97  RSLAVQLQTAASTATAKVRTETIVPIESN 11
           R L +  +  A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 178 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNS 348
           N  L+ F  T T    LLP++     I  ++TV LSL +    S V+ L+F +L  +   
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349

Query: 349 LRRITTRM 372
           +  +T ++
Sbjct: 350 VNELTLKL 357


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 323 VNIRYFTGLTATGRSSDNATVCRIVEFSME 234
           +N+ Y + L+ATG S +  TV  I E + E
Sbjct: 94  INVEYQSNLSATGESVNTTTVSAINEDTRE 123


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 212 LPFNCYLFPWRILRSCIPSHYRWIFP 289
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 399  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 304
            W +LLV  +  C NS   +R+G  Q   +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 523 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 416
           PSD     T VP  + S   PW  TTP     P W+
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = -3

Query: 512  TAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM-CYSYDAHIL-VVILLREFG 339
            T  + G  P     K   GYY+T+   S  +D      G+  +  +  I  + +L R + 
Sbjct: 1118 TFGIGGKDPETGEVKPGFGYYETICGGSGAIDGLDGTSGVHTHMTNTRITDLEVLERRYP 1177

Query: 338  MVNSKVNIRYFTGLTATGRSSDNATVCRIVEF 243
            ++  K  IR  +G    G+      V R +EF
Sbjct: 1178 VILRKFIIRENSG--GAGKYKGGDGVIRDIEF 1207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,116
Number of Sequences: 5004
Number of extensions: 60287
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)