Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n06f
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    32   0.36 
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    32   0.36 
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative...    30   1.1  
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative...    30   1.1  
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative...    30   1.1  
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof...    29   3.4  
At2g01050.1 68415.m00010 hypothetical protein                          28   4.5  
At4g11530.1 68417.m01850 protein kinase family protein contains ...    28   5.9  
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like...    28   5.9  
At4g33600.1 68417.m04773 expressed protein                             27   7.8  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 467 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 363
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 467 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 363
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 222 LKGSGSW*EQYQRTVGTIDSRWV 154
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 222 LKGSGSW*EQYQRTVGTIDSRWV 154
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 222 LKGSGSW*EQYQRTVGTIDSRWV 154
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 379

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 586 PLYCSLQFSLLVTMSSSLWRLPSDTL 509
           P Y  L FS+LVT  +SLW L  D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237


>At2g01050.1 68415.m00010 hypothetical protein
          Length = 515

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = -3

Query: 593 IMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTL-----GYYDTLLDNS 429
           +MT++  P  FF+    FEL E    Y AAL G  P   +    L       +D L D+ 
Sbjct: 108 VMTVMDLPRQFFM--IRFELEE---EYMAALTGG-PWRVLGNYLLVQDWSSRFDPLRDDI 161

Query: 428 TLLDVWAEVDGMCYSYDAHILVVILLREFG 339
               VW  +  + Y+Y    L++ + R  G
Sbjct: 162 VTTPVWVRLSNIPYNYYHRCLLMEIARGLG 191


>At4g11530.1 68417.m01850 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 931

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +3

Query: 159 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 278
           +LN  F       L  + Y+ST TCF+G F     YD   RRI++
Sbjct: 2   MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46


>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
           protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
           thaliana]
          Length = 359

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = -3

Query: 551 HNEF-ELVEVAVRYTAAL----NGSSPSEQINKNTLGYYDTLLDNSTLLDVWA--EVDGM 393
           HN F  L EV+   +A L       S + Q+N    G+   + D     D+W     DG 
Sbjct: 84  HNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQN--DIWLCHSFDGT 141

Query: 392 CYSYDAHILVVILLREF 342
           C+++ A    + +LREF
Sbjct: 142 CFNFTAFQPAINILREF 158


>At4g33600.1 68417.m04773 expressed protein 
          Length = 453

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 161 LESMVPTVRWYCSHQLPLPFNCYLFPWRILR 253
           L +MVP V W   HQ   P    L+ W  LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,708,941
Number of Sequences: 28952
Number of extensions: 327076
Number of successful extensions: 852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)