Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n04r
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)                 31   1.0  
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   4.2  

>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
          Length = 1383

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +2

Query: 77  VKMIVLISYPAM*REPNKRLFSRDRKYI*SLRQTERVISARQSAKLTQRYDAVMGCTIK 253
           +KM VL+S     R P K L+ RDR  +  + QTE  +  +    LT+  D  +GC ++
Sbjct: 805 LKMEVLLSSNVGSRIPQKCLYFRDR--VLEISQTEPELQEQPIMTLTRLRDIALGCGMR 861


>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 149 RKYI*SLRQTERVISARQSAKLTQRYDAVMGCTIKVTYRQTK 274
           R ++ + RQ +R+ S  +S   +  Y+++ GCTI   +RQ +
Sbjct: 259 RLFVSTSRQLKRLESVSRSPIYSHFYESITGCTIIRAFRQQR 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,009,137
Number of Sequences: 59808
Number of extensions: 320658
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)