Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n03r
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   2.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.4  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   4.6  
AF265299-1|AAG17642.1|   63|Tribolium castaneum putative cytochr...    22   4.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   6.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   8.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   8.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   8.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   8.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   8.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   8.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   8.0  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   8.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   8.0  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 695 PHGRRPRVAAAEHSSTRQRPSARRVATGSATCR 597
           P+G + + A+    + R+R   ++V  G AT R
Sbjct: 77  PYGPQQQPASVARRNARERNRVKQVNNGFATLR 109


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 705 SRSTSWTAPASGRCRTFIYTSTSE 634
           +R T  T PAS RC     T  S+
Sbjct: 289 TRGTPRTTPASSRCGQLFNTEESD 312


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 153 FTKYLRSVMVLFFIFYY 203
           F +YL   + L+F FYY
Sbjct: 142 FREYLAEAVQLYFQFYY 158


>AF265299-1|AAG17642.1|   63|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 63

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 534 GISLAVRCLLSMPQAPSQA 590
           GIS A+ CL + P+A  +A
Sbjct: 4   GISFALYCLANNPEAQEKA 22


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 359 TDKRLKNI*NKNYSSFNNISYNAL 288
           T  RLK+  N+   SFN++ Y  L
Sbjct: 292 TPGRLKDFVNRGNVSFNSLKYFVL 315


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 521 SQCSRNKSGGALSPLHAPSTEPG 589
           S  +  KS G  SPL   ++ PG
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPG 155


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 521 SQCSRNKSGGALSPLHAPSTEPG 589
           S  +  KS G  SPL   ++ PG
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPG 155


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 521 SQCSRNKSGGALSPLHAPSTEPG 589
           S  +  KS G  SPL   ++ PG
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPG 155


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 521 SQCSRNKSGGALSPLHAPSTEPG 589
           S  +  KS G  SPL   ++ PG
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPG 155


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 521 SQCSRNKSGGALSPLHAPSTEPG 589
           S  +  KS G  SPL   ++ PG
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPG 155


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 521 SQCSRNKSGGALSPLHAPSTEPG 589
           S  +  KS G  SPL   ++ PG
Sbjct: 89  SNSNATKSSGLTSPLSVSTSPPG 111


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 521 SQCSRNKSGGALSPLHAPSTEPG 589
           S  +  KS G  SPL   ++ PG
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPG 155


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 521 SQCSRNKSGGALSPLHAPSTEPG 589
           S  +  KS G  SPL   ++ PG
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPG 155


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 521 SQCSRNKSGGALSPLHAPSTEPG 589
           S  +  KS G  SPL   ++ PG
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPG 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,861
Number of Sequences: 336
Number of extensions: 3532
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)