Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n03r
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    27   2.9  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    26   5.0  
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    25   8.7  

>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 622 SQRDRQLVVLNAWLGAWGMERRQRTARLIPGTLTTFQIVRGPTEWSIY 479
           +Q+ +   + + W G+     RQ+ A+  PG  ++  I   PTE+S Y
Sbjct: 68  TQKKKNQKIASRWYGSLQSSFRQQFAQYGPGPNSSPIIYDSPTEFSSY 115


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 648 TSTSE-RT*SRNGIGNLSCSTPGSVLGAW 565
           T T+E RT  +N IGNL  +  G V G W
Sbjct: 380 TGTNEYRTLMKNAIGNLIIAVAGYVPGYW 408


>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -1

Query: 676 EWPLPNIHLHVNVRAHVESQRDR--QLVVLNAWLGAWGMERRQRTARLIPGTLTTFQ 512
           EW    I     V+  +  QRDR  Q   LN  +   GM   QRT   + GT+ T Q
Sbjct: 85  EWTALEIERESQVQPPLWYQRDREEQNRTLNFLMS--GMADLQRTINTMQGTMNTMQ 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,100
Number of Sequences: 5004
Number of extensions: 56701
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)