Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n03r
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0521 + 3916876-3916987,3917062-3917438                           34   0.10 
12_01_0441 + 3484003-3484374,3485071-3485151,3485242-3485514,348...    31   0.98 
06_01_0877 + 6728883-6729651,6729989-6730224,6730423-6730704,673...    30   2.3  
04_03_0601 - 17875540-17875776,17876611-17876736,17877700-178777...    29   3.9  
01_05_0013 - 17156017-17157647,17157977-17158144,17160064-171601...    29   5.2  
11_01_0439 + 3353516-3353962,3354403-3354483,3354675-3354947,335...    28   6.9  
03_02_0847 + 11721847-11722294,11723043-11723108,11723276-117233...    28   9.1  

>03_01_0521 + 3916876-3916987,3917062-3917438
          Length = 162

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 698 RPHGRRPRVAAAEHSSTRQRPSARRVATGSATCR-AQRLARCLGHGEE 558
           RPHGRR R  AA     RQR   RR AT +A    A RLA   G G +
Sbjct: 109 RPHGRRIRTPAA--GGVRQRRKQRRSATPAAEAEMAARLADSSGGGRD 154


>12_01_0441 +
           3484003-3484374,3485071-3485151,3485242-3485514,
           3485695-3485826,3485903-3486076,3486164-3486393,
           3486562-3486679,3486717-3486743,3486948-3487079,
           3487189-3487323,3487393-3487599,3487772-3487936
          Length = 681

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -1

Query: 745 LGITGRLRPMLHSFAIDLMDGAREWPLPNIHLHVNVRAHV-ESQRDRQLVVLN-AWLGAW 572
           LG    L+P L +    ++D  R+     +     V   + +   +R+L  +N +WLGAW
Sbjct: 316 LGDASALKPTLMTAVPAILDRVRDGVRKKVDTKGGVAKQLFDVAYNRRLAAVNGSWLGAW 375

Query: 571 GMER 560
           G+E+
Sbjct: 376 GLEK 379


>06_01_0877 +
           6728883-6729651,6729989-6730224,6730423-6730704,
           6731297-6731335,6731719-6731826,6731873-6732220
          Length = 593

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -1

Query: 739 ITGRLRPMLHSFAIDLMDGAREW-PLPNIHLHVNVRAHVESQRDRQLVVLNAWLGA--WG 569
           I G    +L SF I+L        P P I LH NVR   +   +  ++V N W  A  WG
Sbjct: 180 IIGTPGGLLGSFKIELTGATVPGEPDPPIVLHYNVRLLGDKLTEDPVIVQNTWTIADDWG 239

Query: 568 MERR 557
            E R
Sbjct: 240 SEDR 243


>04_03_0601 -
           17875540-17875776,17876611-17876736,17877700-17877727,
           17878131-17878936
          Length = 398

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 615 GIGNLSCSTPGSVLGAWRGDNAPPDLFLEH*LHFKLSAVRLN 490
           GIG   C+ PG  L     +N     FL H  HF+L+ V L+
Sbjct: 50  GIGPAGCALPGFELTCRDTNNGGKKPFLGHGGHFELAGVSLS 91


>01_05_0013 -
           17156017-17157647,17157977-17158144,17160064-17160113,
           17160796-17160833,17161102-17161212
          Length = 665

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 734 WKAPTNATFFRDRPHGRRPRVAAAEHSSTRQRPSARRVATG 612
           WKA  N +   D  + R+ + AAA  +S   R  ARR A G
Sbjct: 84  WKARANVSIPWDASNQRQQQAAAANPTSQPTRRDARRQAGG 124


>11_01_0439 +
           3353516-3353962,3354403-3354483,3354675-3354947,
           3355081-3355212,3355303-3355476,3355568-3355702,
           3355746-3355797,3355954-3356093,3356574-3356705,
           3356787-3356921,3356995-3357201,3357779-3357943
          Length = 690

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 742 GITGRLRPMLHSFAIDLMDGAREWPLPNIHLHVNVRAHV-ESQRDRQLVVLN-AWLGAWG 569
           G    L+P L +    ++D  R+    N+         + +    R+L  +N +W GAWG
Sbjct: 342 GDASALKPTLMTAVPAILDRVRDGVRKNVDAKGGAAKKLFDIAYSRRLAAINGSWFGAWG 401

Query: 568 MER 560
           +E+
Sbjct: 402 LEK 404


>03_02_0847 +
           11721847-11722294,11723043-11723108,11723276-11723358,
           11723585-11723673,11723783-11723906
          Length = 269

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = -3

Query: 710 FFRDRPHGRRPRVAAAEHSSTRQRPSARRVATGSATCRAQRLARCLGHGEETTHRQTYSW 531
           FFRD  HG    +AA+     R  P  R VA     C A    RC+ +   T  R T +W
Sbjct: 173 FFRDIAHGLDRVIAASSVRHARCHPRPRSVA-AVRVCHAIGSQRCV-YNTHTASRGT-AW 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,825,787
Number of Sequences: 37544
Number of extensions: 376936
Number of successful extensions: 1014
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)