Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n03r
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)                 31   1.3  
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           28   7.0  
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             28   9.3  
SB_22708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  

>SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)
          Length = 613

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +3

Query: 399 RSPLTRSAFTPP-GEARCSNSPISISSAYID 488
           RS LT+S + P  GEARCS +  ++S+A+ +
Sbjct: 280 RSDLTQSVYKPELGEARCSGNAKTVSNAFFN 310


>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 641 RPSARRVA-TGSATCRAQRLARCLGHGEETTHRQTYSWNIDY-ISNCPRS 498
           RP A R   T S  CR+   A+C   G   TH+  Y  N +Y    CP S
Sbjct: 361 RPEAGRDRPTSSEACRSWNFAKCFFPGCRYTHQCAYCENGNYPARECPSS 410


>SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -3

Query: 686 RRPRVAAAEHSSTRQRPSARRVATGSATCRAQRLARCLGHGEETTHRQTYSWNIDYIS 513
           ++PRV A +  +TRQ+P  R  A    T R Q   R     + TT +Q   W+ID ++
Sbjct: 88  QQPRVWAIDQVTTRQQP--RVWAIDQVTTRQQ--PRVWSIDQVTTRQQPRVWSIDQVT 141



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -3

Query: 686 RRPRVAAAEHSSTRQRPSARRVATGSATCRAQRLARCLGHGEETTHRQTYSWNIDYIS 513
           ++PRV A +  +TRQ+P  R  A    T R Q   R     + TT +Q   W ID ++
Sbjct: 46  QQPRVWAIDQVTTRQQP--RVWAIDQVTTRQQ--PRVWAIDQVTTRQQPRVWAIDQVT 99


>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 457

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 527 CSRNKSGGALSPLHAPSTEPGVEHDKLPI 613
           C+ +     ++P HAPST P ++ +KL +
Sbjct: 81  CTHDLCNKHINPTHAPSTIPPIKQEKLDV 109


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 716 ATFFRDRPHGRRPRVAAAEHSSTRQRPSARRVATGSAT 603
           A F R    G R R +     S RQR SAR+ A G  T
Sbjct: 227 AAFTRTLAGGPRGRASYRSARSGRQRDSARKAAAGGRT 264


>SB_22708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 609 GNLSCSTPGSVLGAWRGDNAPPDLFLE 529
           GNL+   P + L  W+   APPDL ++
Sbjct: 22  GNLALRQPTASLNIWQEGRAPPDLAVD 48


>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 375 HRKILCG*RSPLTRSAFTPPGEARCSNSPISISSAYIDHS 494
           H ++L    SP+T S+F+P  +A C +   S S++Y + S
Sbjct: 226 HHQMLNMRYSPMTASSFSPACQANCHSPNNSSSNSYTNLS 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,766,713
Number of Sequences: 59808
Number of extensions: 425867
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)