Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n03r
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28010.1 68417.m04018 pentatricopeptide (PPR) repeat-containi...    31   1.1  
At1g26810.1 68414.m03267 galactosyltransferase family protein co...    30   1.4  
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa...    28   5.8  

>At4g28010.1 68417.m04018 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 704

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -2

Query: 750 INLVSLEGSDQCYILSRSTSWT--APASGRCRTFIYTSTSERT*SRNGIGNLSCSTPGSV 577
           IN VSL G  +CY+  R T +     A    R F +   +     +    NL C    S+
Sbjct: 105 INFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSL 164

Query: 576 LGAWRGDNAPPDLF 535
           L   R ++  PD+F
Sbjct: 165 LREMRRNSLMPDVF 178


>At1g26810.1 68414.m03267 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 643

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 718 MLHSFAIDLMDGAREW-PLPNIHLHVNVRAHVESQRDRQLVVLNAWLGA--WGMERR 557
           ++ SF IDL        P P I +H NVR   +   +  ++V N+W  +  WG E R
Sbjct: 194 LVGSFRIDLTGQPLPGEPDPPIIVHYNVRLLGDKSTEDPVIVQNSWTASQDWGAEER 250


>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
           family protein low similarity to polycomb-M33
           interacting protein Ring1B [Mus musculus] GI:2239142;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 427

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 701 DRPHGRRPRVAAAEHSSTRQRPSARRVATGSATCRAQRLARCLGHGEETTHRQ 543
           D    +R + ++++    RQR   +R AT  ++  A     C G+G E TH++
Sbjct: 247 DDDQNKRGKDSSSDEPCERQRK--KRSATQPSSSNANNNDNCAGNGTEQTHQR 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,938,891
Number of Sequences: 28952
Number of extensions: 289044
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)