Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n03f
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.4  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 254 VEGKIPRDLLEYDFAEDAMD 313
           V+  +P  +L +DF ED+++
Sbjct: 597 VQVMVPPQILPFDFGEDSIN 616


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 177 CVLEGLKNCWFLTFC 133
           CV+EG  +CW    C
Sbjct: 484 CVVEGNPHCWVPHSC 498


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -2

Query: 439 YCEPWY 422
           YC+PWY
Sbjct: 33  YCDPWY 38


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 521 VRNTRRRGKWGPEETTA 571
           V+ T + G+W PE++T+
Sbjct: 427 VQTTPKPGQWVPEKSTS 443


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,975
Number of Sequences: 336
Number of extensions: 3134
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)