Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n03f
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 28 1.3
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 3.9
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 26 3.9
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 26 5.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.8
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 25 6.8
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 9.0
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 9.0
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 25 9.0
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 27.9 bits (59), Expect = 1.3
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Frame = +2
Query: 239 MDYDVVEGKIPRDLLEYDFAEDAMDFECQLAESQDVNFTQ-TLSEPLTIGSHIICTGTPS 415
+D + ++ RD + ++ D+ + ES V TQ T S L G+ + PS
Sbjct: 69 IDGNAIDVHNERDPADIKWSTSGADY---VIESTGVFTTQETASAHLKGGAKRVIISAPS 125
Query: 416 EDIPWFAINIGSEELEAGR---SDISVHFNVRQPQCYVVRNT 532
+D P + + + E+ S+ S N P V+ +T
Sbjct: 126 KDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDT 167
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 149 QQFFNPSNTHLKKSKNFAKKIMKCLNCVSKMDYD 250
++F PSN L +KKIMKC++ + D +
Sbjct: 885 KEFNLPSNQLLAMLVKLSKKIMKCIDEIETKDIE 918
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 256 YNV-VIHFTNTIKAFHYFFCKIFRFLQMCIRGIKKLL 149
YN V+ F +TI H F KI +FL +C+R K+ L
Sbjct: 3 YNANVVKFHSTI--LHKFALKISKFLILCMRRNKRQL 37
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 241 HFTNTIKAFHYFFCKIFRFLQMCIR 167
H T TI+AF Y+F F F C R
Sbjct: 66 HHTFTIEAFFYWFFFFFFFFSHCRR 90
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +2
Query: 356 QTLSEPLTIGSHIICTGTPSEDIPWFAINIGSEELEAGR---SDISVHFNVRQPQCYVVR 526
+T S L G+ + PS+D P F + + E+ S+ S N P V+
Sbjct: 106 ETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVIN 165
Query: 527 NT 532
+T
Sbjct: 166 DT 167
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 316 KIHCVLCEIVF*KIPRDFTFYNVVIHFTNTIKA 218
K+H V C + +IP F + ++ NT+KA
Sbjct: 849 KLHQVTCSYISIRIPHKFIPFILIESAINTVKA 881
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 495 LKCTEMSERPASNSSLPMFIANHGMSSLGVPVQIICEPIVKGSDKVCVKF 346
L+ TE+ +P + P + S P+Q +PIV GS + +KF
Sbjct: 4 LELTEVWGKPQKDIFFPS--GSEVEESTDAPIQRTVQPIVTGSSVLALKF 51
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 579 SLYAVVSSGPHFPR 538
SL+ +V S PHFPR
Sbjct: 394 SLFTIVPSRPHFPR 407
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -2
Query: 259 FYNVVIHFTNTIKAFHYFFCKIFRFLQMCIRGIKKLLVL 143
++NVVIH +K F +F + + C + +++L +L
Sbjct: 188 YFNVVIHMLAHVKPFRNYF--LLKNFDNCPQLVQRLAIL 224
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 253 NVVIHFTNTIKAFHY 209
N+ IHF+NTIKA ++
Sbjct: 666 NIPIHFSNTIKAANF 680
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,935
Number of Sequences: 5004
Number of extensions: 49278
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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