Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n03f
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45485| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.00021)        29   2.3  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.3  
SB_14879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_45485| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.00021)
          Length = 510

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 398 CTGTPSEDIPWFAINIGSEELEAGRSDI 481
           CT T +E+ PW+ +++G E +  G+  I
Sbjct: 480 CTHTENENNPWWRVDLGREHIITGKVQI 507


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/89 (28%), Positives = 45/89 (50%)
 Frame = +2

Query: 359  TLSEPLTIGSHIICTGTPSEDIPWFAINIGSEELEAGRSDISVHFNVRQPQCYVVRNTRR 538
            T  EP T+G +++ +G P +      +++ S  +E G S +SV F+       VV   ++
Sbjct: 855  TTDEPKTVGIYLLNSG-PKQ------VHVSSVAVEPGNSAVSVTFSP------VV--LKQ 899

Query: 539  RGKWGPEETTAYRLYPFKVNKQFTIEIVV 625
              K+    +  Y  Y  K ++QFT +IV+
Sbjct: 900  LSKYSKVASITYSAYHVKRSRQFTGKIVI 928


>SB_14879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 236 KMDYDVVEGKIPRDLL-EYDFAEDAMDFECQLAESQDVNFTQTLSEP 373
           ++ YD ++G +PRDL+ +Y  A D  D++ + AE   +     +S+P
Sbjct: 173 RLYYDTIDGTLPRDLVKKYKDAYD--DYKKKHAELTQLQDRMAISDP 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,458,031
Number of Sequences: 59808
Number of extensions: 366891
Number of successful extensions: 863
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)