Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n03f
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    31   0.63 
At3g62360.1 68416.m07005 expressed protein                             30   1.4  
At5g09960.1 68418.m01151 expressed protein similar to unknown pr...    29   3.3  
At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR ...    28   4.4  
At4g32860.1 68417.m04677 expressed protein                             27   7.7  

>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
            very low similarity to SP|Q40863 Late embryogenesis
            abundant protein EMB8 from Picea glauca; contains Pfam
            profile PF02517 CAAX amino terminal protease family
            protein
          Length = 1805

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 493  KMHRDVRTTRL*FFTSYVYCEPWYVFARRSSTNNMRADSQGL*QG 359
            ++ RD++     F  + VY EP + F R S T+N+ A   G  +G
Sbjct: 1251 QLSRDIKKVAKTFSYAVVYSEPTWTFKRNSKTSNVPAGKVGKLRG 1295


>At3g62360.1 68416.m07005 expressed protein
          Length = 1227

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = +2

Query: 278  LLEYDFAEDAMDFECQLAESQDVNFTQTLSEPLTIGSHIICTGTPSEDIPWFAINIGSEE 457
            L EY F    +  E    ES +  F  T      +G   + +G P E +   A +     
Sbjct: 941  LKEYSFKPSTLAIELNSGESSEAVFEATRVAYSAMGRVALLSGQPQEGVAIEARSDSKGY 1000

Query: 458  LEAGRSDISVHFNVR--QPQ-CYVVRNTRRRG 544
             E   SDI+ ++ +R   P   YV++ +++ G
Sbjct: 1001 YEETTSDINGNYRLRGLHPDTAYVIKVSKKIG 1032


>At5g09960.1 68418.m01151 expressed protein similar to unknown
           protein (emb|CAB61744.1)
          Length = 112

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 KNQQFFNPSNTHLKKSKNFAKKIMKCLNCVSK 238
           +NQ+ F+PS+ H   S +  + +  C NC  K
Sbjct: 80  ENQREFSPSHHHQPHSPSTRRSMFSCFNCCVK 111


>At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 843

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -2

Query: 403 STNNMRADSQGL*QGLRKIYVLRFRQLALKIHCVLCEIV 287
           ST+N+R  S GL   L+K+ VLRF   A  + C L +I+
Sbjct: 614 STSNLR--SVGLISELQKLQVLRFYGSAAALDCCLLKIL 650


>At4g32860.1 68417.m04677 expressed protein
          Length = 193

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/91 (25%), Positives = 35/91 (38%)
 Frame = +2

Query: 260 GKIPRDLLEYDFAEDAMDFECQLAESQDVNFTQTLSEPLTIGSHIICTGTPSEDIPWFAI 439
           GKI R  L    +       C+ ++ QDV  +     PL +     C+ TP      +A 
Sbjct: 47  GKILRKSLNEAVSTSHSRITCRPSDHQDVRSSFISPVPLQLEYEFSCSSTPPRRS--YAT 104

Query: 440 NIGSEELEAGRSDISVHFNVRQPQCYVVRNT 532
            +       G  +  +  N RQ Q Y+  NT
Sbjct: 105 TVSKGRRSNGSHNRPL-INKRQRQAYIRYNT 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,680,303
Number of Sequences: 28952
Number of extensions: 251318
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)