Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n02f
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    27   0.16 
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    27   0.16 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.0  

>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 71  VLTAIVAVSTNEVADPRSTDRANALSIGSITSSDRLLRSFV 193
           VL   VAV +   A  + T + + + +  I  SDRLL+++V
Sbjct: 5   VLVLFVAVLSVVFAADKYTTKYDNIDLNQILKSDRLLKNYV 45


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 71  VLTAIVAVSTNEVADPRSTDRANALSIGSITSSDRLLRSFV 193
           VL   VAV +   A  + T + + + +  I  SDRLL+++V
Sbjct: 5   VLVLFVAVVSVVFAADKYTTKYDNIDLNQILKSDRLLKNYV 45


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 448  FLFFRLHKKFVLPIFLINNSRIYFEASLSF 537
            F FF ++  FVL +FL+   + Y      F
Sbjct: 1270 FAFFMMNALFVLIVFLLTLKKDYLHIKWPF 1299


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 448  FLFFRLHKKFVLPIFLINNSRIYFEASLSF 537
            F FF ++  FVL +FL+   + Y      F
Sbjct: 1270 FAFFMMNALFVLIVFLLTLKKDYLHIKWPF 1299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,013
Number of Sequences: 336
Number of extensions: 2422
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)