Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n02f
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0382 - 5076673-5077774,5078122-5078186                           29   2.2  
05_01_0234 - 1743784-1744017,1748103-1749068                           28   5.0  
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    27   8.7  

>04_01_0382 - 5076673-5077774,5078122-5078186
          Length = 388

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 339 KVKPTPPPVRRTLANCVDPRTRTALTRLP 253
           K  PTPPP RR   N +D R +    RLP
Sbjct: 256 KKLPTPPPKRRLGINMLDGRNKLVEYRLP 284


>05_01_0234 - 1743784-1744017,1748103-1749068
          Length = 399

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -3

Query: 288 DPRTRTA-LTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEVILPILKALALSVDLGS 112
           DP+   A  ++L    V + +  R+      L  +LRKSL + +I P L+  ALSV+  +
Sbjct: 196 DPKANIASASQLRGLGVKIRMAKRDR--GGILDVRLRKSLEIRLIPPELEVPALSVEEAT 253

Query: 111 ATSL 100
           A  L
Sbjct: 254 AVLL 257


>01_07_0359 -
           43042675-43042758,43042956-43043024,43043099-43043159,
           43043260-43043768,43044545-43045153,43045697-43045972,
           43046581-43046769,43047006-43047116,43047621-43047908,
           43047990-43048041,43048648-43048824,43049249-43049314,
           43049675-43049929,43050071-43050577,43050807-43050886,
           43050974-43051207
          Length = 1188

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 345 FTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGAVN 238
           F+  +  P P+RR +A+C+ P      T  P  A +
Sbjct: 32  FSSARKPPEPLRRAVADCLSPPAPHTHTHAPPPAAS 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,517
Number of Sequences: 37544
Number of extensions: 242328
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)