Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n01r
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 259 2e-69
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 140 2e-33
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 28 7.3
SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08) 28 7.3
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15) 28 9.6
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 28 9.6
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03) 28 9.6
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 28 9.6
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 28 9.6
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36) 28 9.6
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_11005| Best HMM Match : SspH (HMM E-Value=0.85) 28 9.6
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 28 9.6
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 259 bits (635), Expect = 2e-69
Identities = 121/164 (73%), Positives = 133/164 (81%), Gaps = 1/164 (0%)
Frame = -1
Query: 773 RYCSXVRVIAHTQMKLLKQRQKKAHIMEIQLNGGT-IEDKVKWAREHLEKPIPVDSVFAQ 597
+YC +RVI HTQ KLLK RQKKAHIMEIQ+NGG + +KV W RE LE P PV VF+
Sbjct: 154 KYCKVIRVICHTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSP 213
Query: 596 DEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKG 417
DEMID I T RW TKKLPRKTHKGLRKVACIGAWHP+RVSF+VARAGQ G
Sbjct: 214 DEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAG 273
Query: 416 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 285
YHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 274 YHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 140 bits (338), Expect = 2e-33
Identities = 62/82 (75%), Positives = 70/82 (85%)
Frame = -1
Query: 284 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 105
GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274
Query: 104 RFQTPADKAAFMGTLKKDRIRE 39
RFQ PA+K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296
>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 97.1 bits (231), Expect = 1e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = -1
Query: 419 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 285
GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2 GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46
>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 376 LDKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
LDK MA + HLLS+T RNP LH +E++
Sbjct: 247 LDKRFQDEMAFNVSKCHLLSVTNKRNPSLHEYEIN 281
>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 359 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 234
KK V +N+ T D + + GFPHY + +D + IK
Sbjct: 44 KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 215 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 66
K R++ +K ++H+ + K ++F+ SKF H T A A G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366
>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 267 IMGETSHRCNGFLRQVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 428
++GE FLR++ +S C++ N+ F + D L+ F++ + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 744 PHSNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQ-RTSGETYP 619
PH N + T G H NPT HR S GQ R +G P
Sbjct: 282 PHQNGSNVTNIPVGGHPSNPTPAAIHRSMSVGGQPRVNGPGNP 324
>SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
Length = 337
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +3
Query: 276 ETSHRCNGFLRQVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 440
ETS R FLRQV ++ C + FA++ + T + LV FS L+ SY
Sbjct: 9 ETSLRYVSFLRQVYIANCALNAIFAVIAI-----TGNLLVLFSIWKCRLLSEPSY 58
>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
Length = 291
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 173 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 206
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 204 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 237
>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
Length = 347
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 275 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 308
>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 59 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 92
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 1091 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1124
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 1283 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1316
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 643 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 676
>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1022
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 832 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 865
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 332 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 225
++STE++ + + G F +G+V ND + CC
Sbjct: 3492 HSSTEFNSTLRGGIKSGKFKDFGKVRNDVDCVNRCC 3527
>SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)
Length = 105
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 722 KQRQKKAHIMEIQLNGGTIEDKVKWAREHLEK 627
KQ+ K + E++ N +EDKV+W + EK
Sbjct: 53 KQKLAKNLLREMERNETDVEDKVEWTKAITEK 84
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 895 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 928
>SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 75 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 108
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 373 DKESTKRMAKLLKTMHLLSMTCLRNP-LHRWEVS 275
D T +MA + HLLS+T RNP LH +E++
Sbjct: 979 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1012
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,563,306
Number of Sequences: 59808
Number of extensions: 558803
Number of successful extensions: 1212
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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