Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n01r
         (773 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   443   e-124
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   443   e-124
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   443   e-124
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   443   e-124
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   443   e-124

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  443 bits (1091), Expect = e-124
 Identities = 203/246 (82%), Positives = 220/246 (89%)
 Frame = -1

Query: 773 RYCSXVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQD 594
           RYC  +RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QD
Sbjct: 166 RYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQD 225

Query: 593 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGY 414
           EMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGY
Sbjct: 226 EMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGY 285

Query: 413 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 234
           HHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIK
Sbjct: 286 HHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIK 345

Query: 233 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 54
           GCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKK
Sbjct: 346 GCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKK 405

Query: 53  DRIREE 36
           DR++EE
Sbjct: 406 DRLKEE 411


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  443 bits (1091), Expect = e-124
 Identities = 203/246 (82%), Positives = 220/246 (89%)
 Frame = -1

Query: 773 RYCSXVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQD 594
           RYC  +RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QD
Sbjct: 155 RYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQD 214

Query: 593 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGY 414
           EMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGY
Sbjct: 215 EMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGY 274

Query: 413 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 234
           HHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIK
Sbjct: 275 HHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIK 334

Query: 233 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 54
           GCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKK
Sbjct: 335 GCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKK 394

Query: 53  DRIREE 36
           DR++EE
Sbjct: 395 DRLKEE 400


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  443 bits (1091), Expect = e-124
 Identities = 203/246 (82%), Positives = 220/246 (89%)
 Frame = -1

Query: 773 RYCSXVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQD 594
           RYC  +RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QD
Sbjct: 142 RYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQD 201

Query: 593 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGY 414
           EMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGY
Sbjct: 202 EMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGY 261

Query: 413 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 234
           HHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIK
Sbjct: 262 HHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIK 321

Query: 233 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 54
           GCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKK
Sbjct: 322 GCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKK 381

Query: 53  DRIREE 36
           DR++EE
Sbjct: 382 DRLKEE 387


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  443 bits (1091), Expect = e-124
 Identities = 203/246 (82%), Positives = 220/246 (89%)
 Frame = -1

Query: 773 RYCSXVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQD 594
           RYC  +RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QD
Sbjct: 142 RYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQD 201

Query: 593 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGY 414
           EMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGY
Sbjct: 202 EMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGY 261

Query: 413 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 234
           HHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIK
Sbjct: 262 HHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIK 321

Query: 233 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 54
           GCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKK
Sbjct: 322 GCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKK 381

Query: 53  DRIREE 36
           DR++EE
Sbjct: 382 DRLKEE 387


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  443 bits (1091), Expect = e-124
 Identities = 203/246 (82%), Positives = 220/246 (89%)
 Frame = -1

Query: 773 RYCSXVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQD 594
           RYC  +RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QD
Sbjct: 155 RYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQD 214

Query: 593 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGY 414
           EMIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGY
Sbjct: 215 EMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGY 274

Query: 413 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 234
           HHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIK
Sbjct: 275 HHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIK 334

Query: 233 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 54
           GCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKK
Sbjct: 335 GCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKK 394

Query: 53  DRIREE 36
           DR++EE
Sbjct: 395 DRLKEE 400


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,270,073
Number of Sequences: 53049
Number of extensions: 790283
Number of successful extensions: 2251
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2251
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3581842374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)