Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n01r
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   303   6e-83
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   303   6e-83
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   302   2e-82
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote...    30   1.5  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    29   3.4  
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.4  
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ...    28   6.0  

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  303 bits (745), Expect = 6e-83
 Identities = 143/241 (59%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
 Frame = -1

Query: 773 RYCSXVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQ 597
           +Y + +RV+AHTQ++ +K  +QKKAH+MEIQ+NGGTI  KV +A    EK IP+++VF +
Sbjct: 155 KYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQK 214

Query: 596 DEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKG 417
           DEMID I            +RW   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ G
Sbjct: 215 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNG 274

Query: 416 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 237
           YHHRTE+NKKIYR+G     K G    + A TEYD +EK +TPMGGFPHYG V +D++MI
Sbjct: 275 YHHRTELNKKIYRLG-----KVG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMI 328

Query: 236 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 57
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 56  K 54
           K
Sbjct: 389 K 389


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  303 bits (745), Expect = 6e-83
 Identities = 143/241 (59%), Positives = 179/241 (74%), Gaps = 1/241 (0%)
 Frame = -1

Query: 773 RYCSXVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQ 597
           +Y + +RV+AHTQ++ +K  +QKKAH+MEIQ+NGGTI  KV +A    EK IP+++VF +
Sbjct: 155 KYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQK 214

Query: 596 DEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKG 417
           DEMID I            +RW   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ G
Sbjct: 215 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNG 274

Query: 416 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 237
           YHHRTE+NKKIYR+G     K G    + A TEYD +EK +TPMGGFPHYG V +D++MI
Sbjct: 275 YHHRTELNKKIYRLG-----KVG-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMI 328

Query: 236 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 57
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 56  K 54
           K
Sbjct: 389 K 389


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  302 bits (741), Expect = 2e-82
 Identities = 143/241 (59%), Positives = 180/241 (74%), Gaps = 2/241 (0%)
 Frame = -1

Query: 773 RYCSXVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQ 597
           +YCS +RV+AHTQ++ +K  +QKKAH+ EIQ+NGG I  KV +A    EK +PVD++F +
Sbjct: 155 KYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQK 214

Query: 596 DEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKG 417
           DEMID I            +RW   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ G
Sbjct: 215 DEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNG 274

Query: 416 YHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMI 237
           YHHRTEMNKK+YR+G     K G+   ++A TEYD +EK ITPMGGFPHYG V  D++MI
Sbjct: 275 YHHRTEMNKKVYRVG-----KVGQE-THSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMI 328

Query: 236 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 60
           KGCC+GPKKR++TLR++L   T R A+E+I LKFID +S  GHGRFQT  +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388

Query: 59  K 57
           K
Sbjct: 389 K 389


>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 382

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 597 LGKHRIDRDRFLQMFSGPFHFVLDGTT 677
           L KH + +D+ L+++ G +H +L+G T
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEGDT 360


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = -1

Query: 296 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEKINLKFIDT 126
           I P+   P Y  V  DF + KGC   P+K+   L     SLR H     ++K        
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDKCG-----A 340

Query: 125 SSKFGHGRFQTPADKAAFMGTLKKD 51
              + +G      DK++  G +K D
Sbjct: 341 CKTYSNGFKYECHDKSSCRGNIKYD 365


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 416 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 264
           Y     MNK  Y    G+ K+D    +++N A   +DL +  I+  G   H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314


>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 253

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 738 SNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQRTSGETYPCRFC 607
           S +  K A +EGS  G        +G  E G+  SG+ Y CRFC
Sbjct: 18  SKDGNKQALEEGSSSGQRK----KKGSKE-GKDESGKVYECRFC 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,603,235
Number of Sequences: 28952
Number of extensions: 380270
Number of successful extensions: 964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)