Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10n01f
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 273 1e-74
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 272 2e-74
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 3.7
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 3.7
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 26 4.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 6.5
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 8.6
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 273 bits (669), Expect = 1e-74
Identities = 123/195 (63%), Positives = 156/195 (80%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSH KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 567
NW+ + + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178
Query: 568 MEIQLNGGTIEDKVK 612
MEIQ+NGG++ DKV+
Sbjct: 179 MEIQVNGGSVADKVE 193
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 272 bits (668), Expect = 2e-74
Identities = 122/195 (62%), Positives = 156/195 (80%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSH KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 567
NW+ + + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178
Query: 568 MEIQLNGGTIEDKVK 612
MEIQ+NGG++ DKV+
Sbjct: 179 MEIQVNGGSVADKVE 193
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 496 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 606
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 302 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 454
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 204 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 40
F N VG G+I D S + +R+VF D +G L ++SH T F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 459 FASKLILPFLTGFSESLLLAFVPVFVEATST 367
F SKL L + F E + LAF+ F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 381 LQKLVQMQEEGFH*SQ*EMAG*AWTQINRKRFQEDDPLL*CC-KSHCPHSNEAVKTATKE 557
L KL+Q+ + M+ + I+ K+F+E D L CC +SH ++ ++
Sbjct: 284 LNKLIQLNSAFLDEFEAIMSDLNFEDIDEKKFEEIDLRLACCFESHFFAFSQHYPRYLEQ 343
Query: 558 GSHYGN 575
+ +GN
Sbjct: 344 SNDFGN 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,162
Number of Sequences: 5004
Number of extensions: 52709
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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