Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10n01f
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   7.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 294 CWIH*DPSWTTRSVDCLG 347
           C  + D +W T +VDC G
Sbjct: 765 CKCYNDRTWNTNAVDCSG 782


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 260 MVTASTISFLLIFEPGRSGSLTTWVI 183
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 280 VCVGVVGYIETPHGLRALLTV 342
           VCVG +   E   GLRA++ V
Sbjct: 12  VCVGALTLEELQIGLRAVIPV 32


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 452 PSSSCHFLLALVKAFFLHL 396
           P+ S H+LLAL+   F  L
Sbjct: 43  PNPSLHYLLALLYILFTFL 61


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = -3

Query: 391 SFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKP 278
           S CR       T APP+  TE  V      +    H P
Sbjct: 440 SACRIHGSPATTAAPPQLPTEESVDALCNTLHHWHHCP 477


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 169 GYKAGMTHVVREPDRPGSKINKKEI 243
           GY + M+    +P  P SKI + E+
Sbjct: 131 GYASPMSTSSYDPYSPNSKIGRDEL 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,512
Number of Sequences: 438
Number of extensions: 3357
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)