Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m24f
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   5.3  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.0  

>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 109 ENAEAPTSAAAQHRSHKALFMLTATKNASDAIYS 8
           ENA  P + +A  R H A+    A  + S A++S
Sbjct: 337 ENASQPVAPSASQREHSAVNSPAAAMSPSTAMFS 370


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 304 AQRSGRSDQSQTCSASLNHVSSGHRIRYERP 212
           +Q  GRS+ SQ  + SL  + +  R+ ++RP
Sbjct: 130 SQVEGRSELSQVENDSLESIGNYDRVEFKRP 160


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 172 AILRKFSWPMHSVSGFCLKFIE 107
           A+L +F +P H   G CL +IE
Sbjct: 62  AVLPEFQFPSHPQIGDCLSWIE 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,375
Number of Sequences: 5004
Number of extensions: 23270
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)