Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m24f
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0425 + 9167684-9167803,9168034-9168108,9168200-9168653,916...    29   1.7  
03_02_0440 - 8500068-8501252                                           29   1.7  
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043...    28   5.3  

>09_02_0425 +
           9167684-9167803,9168034-9168108,9168200-9168653,
           9168735-9168784
          Length = 232

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 166 LRKFSWPMHSVSGFCLKFIENAEAPTSAAAQHRSH 62
           LR  S P+  V G C   +   EAPT    Q R H
Sbjct: 58  LRLISKPLPGVCGVCADGVRPGEAPTRRGQQQRRH 92


>03_02_0440 - 8500068-8501252
          Length = 394

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 453 DSEENQVEEPAQPSDEVAENDE 518
           D E N  EEP Q +DEVA ++E
Sbjct: 220 DDENNDQEEPEQQADEVAHDEE 241


>01_05_0627 +
           23802235-23802853,23803357-23803430,23804207-23804364,
           23804640-23804964
          Length = 391

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 301 QRSGRSDQSQTCSAS-LNHVSSGHRIRYERPA*HWK*WKQSSMLAILRKFSWP 146
           ++ GR   S  CSA  L+HV S  R    RPA  W  W++S M A +   S P
Sbjct: 45  KKKGRRT-STACSAERLSHVKSSTRTSSSRPA-PW--WRRSRMAAAVAVTSSP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,367,398
Number of Sequences: 37544
Number of extensions: 172781
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)