Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m24f
(529 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 42 2e-04
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 37 0.008
Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical pr... 34 0.072
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 34 0.072
DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin p... 34 0.072
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 32 0.22
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 32 0.29
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 32 0.29
AL023856-8|CAA19565.2| 326|Caenorhabditis elegans Hypothetical ... 28 4.8
Z81484-8|CAE11295.1| 325|Caenorhabditis elegans Hypothetical pr... 27 6.3
AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical... 27 6.3
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 168 IASIEDCFHYFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERCA 305
IA +C +++C GR +M CP T FN VCDW C+
Sbjct: 1252 IADANNCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAVPSCS 1297
Score = 36.7 bits (81), Expect = 0.010
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 195 YFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERC 302
Y QC G + + RC E +FNEA Q C + D C
Sbjct: 708 YIQCSNGAAIVRRCGESLYFNEATQECTYRDEVPEC 743
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 168 IASIEDCFHYFQCYAGRSYLMRCPEETWFNEAEQVC 275
I SI + C AG +Y+ +CP+ FNE Q C
Sbjct: 106 IYSIGCSNQFISCVAGGAYMAKCPDSLVFNERTQDC 141
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 183 DCFHYFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERCAK 308
DC + +C G SY CP F+ +CD D P +CAK
Sbjct: 577 DCLKFIRCVNGISYNFECPNGLSFHADTMMCDRPD-PSKCAK 617
>Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical
protein C07G2.1a protein.
Length = 584
Score = 33.9 bits (74), Expect = 0.072
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 141 CIGQ-ENFLRIASIEDCFHYFQCYAGRSYLMRCPEETWFNEAEQVCDW-SDLPE 296
C+G+ + F D HY C G M+CP F+EA +CD+ ++PE
Sbjct: 214 CVGKADGFYSFGECSD--HYTACSNGYLIPMQCPARLAFDEARVICDYVMNVPE 265
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 33.9 bits (74), Expect = 0.072
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 141 CIGQENFLRIASIEDCFH-YFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPER 299
C G+ N I E C +F C+ GR++ CP + FN+A CD+++ E+
Sbjct: 433 CTGKPNGKYIK--EACTKSFFTCHDGRAFANDCPGDLVFNKATGTCDFAENCEK 484
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 195 YFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERC 302
Y QC GRS + C ++NE +C + + C
Sbjct: 906 YVQCMQGRSLISSCAPGLFYNEKNGMCAYKHTVDTC 941
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 108 SINLRQNPETL-CIGQENFLRIASIEDCF-HYFQCYAGRSYLMRCPEETWFNEAEQVCDW 281
++N+RQ ++ C+G+ + C +Y+QC G SY+ +CP + + + CD+
Sbjct: 100 TLNVRQKAVSINCVGRLSGDYALDKTVCNENYYQCANGISYMRKCPYQQVYVPILKRCDY 159
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 183 DCFHYF-QCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERC 302
DC Y +CY +++ CP +++ + CD + E C
Sbjct: 700 DCEKYLIKCYNRKTFKFPCPSGLYYSRLQDKCDVKENVEGC 740
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 186 CFHYF-QCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERC 302
C YF QC G+ + CPE+ + + +CD+ + + C
Sbjct: 217 CSPYFWQCSNGKLFRKTCPEKLIYVLDQNLCDFPESVKDC 256
>DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin
proteoglycan-1 protein.
Length = 584
Score = 33.9 bits (74), Expect = 0.072
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 141 CIGQ-ENFLRIASIEDCFHYFQCYAGRSYLMRCPEETWFNEAEQVCDW-SDLPE 296
C+G+ + F D HY C G M+CP F+EA +CD+ ++PE
Sbjct: 214 CVGKADGFYSFGECSD--HYTACSNGYLIPMQCPARLAFDEARVICDYVMNVPE 265
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 32.3 bits (70), Expect = 0.22
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +3
Query: 96 ASAFSINLRQNPE-TLCIGQENFLRIASIEDCF-HYFQCYAGRSYLMRCPEETWFNEAEQ 269
+S F N + + T C +N L DC C GR + CP FNE
Sbjct: 294 SSGFMENYKASEALTPCTNMDNGLYAL---DCTPRVLSCQNGRENIFECPPSLVFNENSL 350
Query: 270 VCDWSDLPERC 302
+CD+ + +C
Sbjct: 351 ICDYPETSLKC 361
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 195 YFQCYAGRSYLMRCPEETWFNEAEQVCDW 281
+F C G ++ CP FN A CDW
Sbjct: 194 FFSCSEGIAHRRNCPANLVFNPAISSCDW 222
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 195 YFQCYAGRSYLMRCPEETWFNEAEQVCDW 281
+ C +G + M CPE+ +++ + CDW
Sbjct: 42 FLACVSGEARYMDCPEDLVYHKNLEFCDW 70
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 204 CYAGRSYLMRCPEETWFNEAEQVCDWSDLPERC 302
C G +M CP+ F+E Q+CD+ + C
Sbjct: 258 CTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDEC 290
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.29
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 192 HYFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERC 302
+YF C + + CP +++ Q C W L E C
Sbjct: 154 YYFFCTTNTARFLSCPTPLFYDADSQKCIWKSLVEEC 190
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 192 HYFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERCA 305
++ C G + +M CP FN VCDW CA
Sbjct: 263 NFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECA 300
Score = 30.7 bits (66), Expect = 0.67
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 195 YFQCYAGRSYLMRCPEETWFNEAEQVCDW 281
+ C G + +M CP + +NE +CDW
Sbjct: 41 FLTCSGGIARIMDCPADLIYNEPLLICDW 69
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/54 (24%), Positives = 20/54 (37%)
Frame = +3
Query: 141 CIGQENFLRIASIEDCFHYFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERC 302
C+G +N L C G + CP FN+ +CD+ +C
Sbjct: 403 CVGLDNGLHAIGCSP--RVLSCQNGHVDIFECPSSLVFNDQSLICDYPQTSLKC 454
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.29
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 192 HYFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERC 302
+YF C + + CP +++ Q C W L E C
Sbjct: 154 YYFFCTTNTARFLSCPTPLFYDADSQKCIWKSLVEEC 190
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 192 HYFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERCA 305
++ C G + +M CP FN VCDW CA
Sbjct: 263 NFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECA 300
Score = 30.7 bits (66), Expect = 0.67
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 195 YFQCYAGRSYLMRCPEETWFNEAEQVCDW 281
+ C G + +M CP + +NE +CDW
Sbjct: 41 FLTCSGGIARIMDCPADLIYNEPLLICDW 69
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/54 (24%), Positives = 20/54 (37%)
Frame = +3
Query: 141 CIGQENFLRIASIEDCFHYFQCYAGRSYLMRCPEETWFNEAEQVCDWSDLPERC 302
C+G +N L C G + CP FN+ +CD+ +C
Sbjct: 403 CVGLDNGLHAIGCSP--RVLSCQNGHVDIFECPSSLVFNDQSLICDYPQTSLKC 454
>AL023856-8|CAA19565.2| 326|Caenorhabditis elegans Hypothetical
protein Y94A7B.3 protein.
Length = 326
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 184 SSMLAILRKFSWPMHSVSGFCLKF 113
S++L I+ FS+P+H G+C+ F
Sbjct: 13 STILFIIAGFSFPIHLFGGYCILF 36
>Z81484-8|CAE11295.1| 325|Caenorhabditis elegans Hypothetical
protein C47A10.9 protein.
Length = 325
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 184 SSMLAILRKFSWPMHSVSGFCLKF 113
S +L ++ FS+P+H G+C+ F
Sbjct: 10 SQILYVIAAFSFPIHLFGGYCILF 33
>AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical
protein Y53F4B.21 protein.
Length = 1099
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 184 IVSTTSSAMLAAHILCDVQKRHGLTRQNRFATGRTY 291
I++ +A+ +LC + +GLTRQ+ F + Y
Sbjct: 915 IITQIGNAISLVRMLCQAARENGLTRQDLFPQVKKY 950
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,591,848
Number of Sequences: 27780
Number of extensions: 140637
Number of successful extensions: 524
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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