Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m24f
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   7.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 142 HSVSGFCLKFI 110
           ++VSGFCL F+
Sbjct: 448 YAVSGFCLLFL 458


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 142 HSVSGFCLKFI 110
           ++VSGFCL F+
Sbjct: 501 YAVSGFCLLFL 511


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 111 INLRQNPETLCIGQENFLRIAS 176
           +   + P+ LC G +N+L I +
Sbjct: 59  VQCAKGPDELCGGPQNYLGICA 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,717
Number of Sequences: 438
Number of extensions: 1628
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)