Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m24f
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR...    28   4.5  
At1g31230.1 68414.m03822 bifunctional aspartate kinase/homoserin...    27   7.8  
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4...    27   7.8  

>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
           class), putative similar to zinc finger protein
           (GI:15811367) [Arabidopsis thaliana]; similar to
           TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana];
           similar to disease resistance protein RPP1-WsB
           (GI:3860165) [Arabidopsis thaliana]
          Length = 1996

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 198 FQCYAGRSY-LMRCPEETWFNEAEQVCDWSDLPE 296
           F C    +Y +++C   T+  E EQ+ DWS+  E
Sbjct: 895 FSCTPSDAYEIVQCGVGTYGEEIEQISDWSNASE 928


>At1g31230.1 68414.m03822 bifunctional aspartate kinase/homoserine
           dehydrogenase / AK-HSDH nearly identical to gb|X71364
           [PIR|S46497] aspartate kinase / homoserine dehydrogenase
           from Arabidopsis thaliana;  contains ACT domain
          Length = 911

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -1

Query: 154 SWPMHSVSGFCLKFIENAEAPTSAAAQHRSHKALFMLTATKNASDAIY 11
           SW +H   G C+   E  +   +   +  S + L +++A    +D +Y
Sbjct: 83  SWAVHKFGGTCVGNSERIKDVAAVVVKDDSERKLVVVSAMSKVTDMMY 130


>At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663
            from (Arabidopsis thaliana)
          Length = 1520

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 284  RPVANLFCLVKPCLF-WTSHKI*AASIALEVVETIFNAGYPQE 159
            +PVA   CL+  CL  W S ++   SI   ++ETI +A   QE
Sbjct: 1122 KPVAA--CLIYKCLIHWRSFEVERTSIFNRIIETIASAIEMQE 1162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,043,074
Number of Sequences: 28952
Number of extensions: 130652
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)