Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m23r
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40070.1 68415.m04923 expressed protein 36 0.037
At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containi... 32 0.46
At3g29080.1 68416.m03641 hypothetical protein 30 1.4
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.4
At4g24680.1 68417.m03533 expressed protein 30 1.9
At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein s... 29 2.5
At1g10880.1 68414.m01250 expressed protein contains Pfam profile... 29 2.5
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 29 3.3
At1g74010.1 68414.m08571 strictosidine synthase family protein s... 29 3.3
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar... 29 3.3
At5g43310.1 68418.m05293 COP1-interacting protein-related contai... 29 4.3
At1g21440.1 68414.m02681 mutase family protein similar to carbox... 29 4.3
At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid t... 28 5.7
At3g28790.1 68416.m03593 expressed protein 28 5.7
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 28 5.7
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 5.7
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 28 7.5
At1g34000.2 68414.m04216 light stress-responsive one-helix prote... 28 7.5
At1g34000.1 68414.m04215 light stress-responsive one-helix prote... 28 7.5
At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate aldol... 28 7.5
At2g48160.1 68415.m06031 PWWP domain-containing protein 27 9.9
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 35.5 bits (78), Expect = 0.037
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Frame = -3
Query: 600 TRPWSRRLAQSVCTPRIPLVS-SASTGMSNPLTSSL-PWLCLPARTYPNPEMSAALAKST 427
T P S+ +++S R P+ S SA+T +NP S + P PA+ P P + AL+++
Sbjct: 303 TLPPSKTISRSSTPTRRPIASASAATTTANPTISQIKPSSPAPAKPMPTPSKNPALSRAA 362
Query: 426 ANLESN*AASTCPWCP---PTVSLR-PPARKARLPSTML 322
+ + PW P P SL PP + LP L
Sbjct: 363 SP-----TVRSRPWKPSDMPGFSLETPPNLRTTLPERPL 396
>At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 695
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +2
Query: 479 GRQSHGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQGRVNYHHQTITDPDETDILEAA 658
G+Q H + + G++ D+ + + V C LR +Y + I +PD+ +
Sbjct: 206 GKQIHAQILIGGVEC--DSKMNSSLVNVYAKCGDLR---MASYMLEQIREPDDHSLSALI 260
Query: 659 SGAXDPARVNEGTG 700
SG + RVNE G
Sbjct: 261 SGYANCGRVNESRG 274
>At3g29080.1 68416.m03641 hypothetical protein
Length = 445
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 330 YLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSL 479
+L +WPSSL + T + + S S GSP TSP+ + P RS++
Sbjct: 160 FLTIWPSSLQTLACDTFRLTRFTVKSSVSFGSP-TSPETKLIPSLRRSTI 208
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 30.3 bits (65), Expect = 1.4
Identities = 36/132 (27%), Positives = 47/132 (35%), Gaps = 1/132 (0%)
Frame = -3
Query: 723 PVVCSTXAPVPSFTLAGSSAPLAAXXXXXXXXXXXXXXX*LTRPWSRRLAQSVCTPRIPL 544
P+ +P P + S +PLA L P RL R+P
Sbjct: 394 PLYRRNRSPSPLYRRNRSRSPLAKRGRSDSPGRSPSPVARLRDPTGARLPSPSIEQRLPS 453
Query: 543 VSSASTGMSNP-LTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCPPTVS 367
A S P + LP PA+ P+P A S + + AA+ P S
Sbjct: 454 PPVAQRLPSPPPRRAGLP-SPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLE-SPSPSS 511
Query: 366 LRPPARKARLPS 331
L PP RK LPS
Sbjct: 512 LSPPGRKKVLPS 523
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 29.9 bits (64), Expect = 1.9
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +3
Query: 381 GTTDTSKQLSCSPGSPS-TSPKPQTFPDSGRSSLAD--KATGEMKSVGWTSLLMLTRPMV 551
GT+ S + PGSPS S +P + R S AD KA SV W S +RP
Sbjct: 63 GTSSLSPRTESGPGSPSHLSNRPSSGGSVTRPSTADSNKAHDSSSSVAWDS---NSRPSS 119
Query: 552 SEGCRRTALVSVT-RDGLITTTRP*RTQMKR 641
+ G + SV + TRP +Q+ R
Sbjct: 120 ASGVFPSNQPSVALQRPHSADTRPGSSQLSR 150
>At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein
similar to chitinase GI:17799 from [Brassica napus];
contains Pfam profiles PF00182: Chitinase class I,
PF00187: Chitin recognition protein
Length = 281
Score = 29.5 bits (63), Expect = 2.5
Identities = 28/109 (25%), Positives = 38/109 (34%)
Frame = +3
Query: 351 SLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLL 530
++ SR GTT C G ++ PKP P SG L G + SV +
Sbjct: 39 NMCCSRWGYCGTTKAYCGTGCQSGPCNSKPKPTPTP-SGSGGLNAGPRGTIASVITPAFF 97
Query: 531 MLTRPMVSEGCRRTALVSVTRDGLITTTRP*RTQMKRTSWRQLAALXTQ 677
V GC A TR I + R++AA+ Q
Sbjct: 98 NSIMSKVGSGC--PAKGFYTRQAFIAAAESFAAYKGTVAKREIAAMLAQ 144
>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 651
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 405 LSCSP-GSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSEGCRRTALV 581
LS +P SPS SP P P S S++AD + + W + + PM +E + A +
Sbjct: 69 LSSNPLTSPSLSPPPSPSPRSSGSNIAD------EELMWRAAMAPRSPMKNETHPKVAFM 122
Query: 582 SVTR 593
+TR
Sbjct: 123 FLTR 126
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 336 EVWPSSLVASRRPSAGTTDTSKQLSCSPG-SPSTSPKPQTFPDSGRSSLADKATGEMKSV 512
E+ SS+V + + T T + C SPS SP P P S LA + E++ +
Sbjct: 504 ELVESSMVGAIESRSSTHATIEDPVCEQSPSPSPSPSPSPSPSPSPSVLASECCSEVERI 563
>At1g74010.1 68414.m08571 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]; contains strictosidine synthase
domain PF03088
Length = 325
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = -2
Query: 388 VVPADGLLEATSEEGQTSKYDVGTALVSDDVQVAVLLAGADENSAGTFVPVAEYIE 221
V+ A GL +A+ G+ KYD T V++ ++ AG +S G+FV V+E+I+
Sbjct: 169 VLIAVGLKDAS---GKLFKYDPATKAVTELMEGLSGAAGCAVSSDGSFVLVSEFIK 221
>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
gb|U06698 neuronal kinesin heavy chain from Homo sapiens
and contains a PF|00225 Kinesin motor domain. EST
gb|AA042507 comes from this gene; identical to cDNA
MKRP1 mRNA for kinesin-related protein, GI:16902291,
kinesin-related protein [Arabidopsis thaliana]
GI:16902292
Length = 890
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -3
Query: 549 PLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTA 424
P S+S ++P+TSS P L R+ P+P S+A A STA
Sbjct: 29 PETPSSSHFSASPVTSSSPLL----RSSPSPSTSSAAASSTA 66
>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
similarity to COP1-Interacting Protein 7 (CIP7)
[Arabidopsis thaliana] GI:3327868
Length = 1237
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 447 QTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSEGCRRTALVS 584
Q FP +G+ S K+TG M + + L R ++ G R T +S
Sbjct: 836 QKFPKNGKLSTVSKSTGNMLTRSISPLPPAKRESIATGIRLTRSIS 881
>At1g21440.1 68414.m02681 mutase family protein similar to
carboxyvinyl-carboxyphosphonate phosphorylmutase
GB:O49290 from [Arabidopsis thaliana]; similar to
carboxyphosphonoenolpyruvate mutase (GI:47149)
[Streptomyces hygroscopicus]; contains Prosite PS00161:
Isocitrate lyase signature
Length = 336
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 603 LTRPWSRRLAQSVCT--PRIPLVSSASTGMSNPL 508
+T P A+SVC P+IP+++ A TG N L
Sbjct: 95 ITPPEMAATARSVCAAAPKIPIIADADTGGGNAL 128
>At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 208
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 375 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEM 503
S TT + +S S G+P+TSP P++ +S + T M
Sbjct: 130 SGATTPGASPVSPSAGAPTTSPSAAKSPETSATSPSSDETPSM 172
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 363 SRRPSAGTT--DTSKQLSCSP-GSPSTSPKPQTFPDSGRSS 476
+ + S+G T DT+ S SP GSPS SP P T D SS
Sbjct: 355 TNKGSSGDTYKDTTGTSSGSPSGSPSGSPTPSTSTDGKASS 395
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 28.3 bits (60), Expect = 5.7
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Frame = -2
Query: 625 RYGLVVVINPSLVTETSAVRLHPSDTIGLVSINRDVQPT-----DFISPVALSASEDLPE 461
RY + +N +++ D + + + D +P+ D IS S ++D+ E
Sbjct: 875 RYSTIDEVNAAILQLEEREHASSGDKVS-IERHSDTKPSNKSSSDVISSNGKSTAKDIRE 933
Query: 460 SGNVCGFGEVDGEPGEQLSCFDVSVVPAD-GLLEATSEEGQTSKYDVGTALVSDD 299
+G G E D + G D D G E SE G YD G SDD
Sbjct: 934 NGEAHG-EESDSDSGSGSVVRDGQNEELDDGNHERGSESGDGDDYDDGDGPGSDD 987
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 345 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKAT 494
PSS +S PS+ + + LS SP SP P P + P S S + +T
Sbjct: 90 PSSSPSSAPPSSLSPSSPPPLSLSPSSP-PPPPPSSSPLSSLSPSSSSST 138
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 478 SEDLPESGNVCGFGEVDGEPGEQLSCFDVSVVPADGLLEATSEEGQTSK 332
+E+ P G G + +GE GE+ + +++ G LE S+ +TSK
Sbjct: 999 NEETPRLGENGGCNQQNGESGEESTSVTENII--GGKLEQKSKNSETSK 1045
>At1g34000.2 68414.m04216 light stress-responsive one-helix protein
(OHP2) contains similarity to photosystem II 22 kDa
protein GI:6006279 from [Arabidopsis thaliana]
Length = 145
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 366 RRPSAGTTDTSKQLSCSPGSPSTSPKPQTFP 458
RRPSA T Q P PS+SP P P
Sbjct: 51 RRPSAPPTLREPQKPVPPSQPSSSPPPSPPP 81
>At1g34000.1 68414.m04215 light stress-responsive one-helix protein
(OHP2) contains similarity to photosystem II 22 kDa
protein GI:6006279 from [Arabidopsis thaliana]
Length = 172
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 366 RRPSAGTTDTSKQLSCSPGSPSTSPKPQTFP 458
RRPSA T Q P PS+SP P P
Sbjct: 51 RRPSAPPTLREPQKPVPPSQPSSSPPPSPPP 81
>At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate
aldolase, putative / 3-deoxy-D-arabino-heptulosonate
7-phosphate synthase, putative / DAHP synthetase,
putative similar to 3-deoxy-D-arabino-heptulosonate
7-phosphate GI:170224 from [Nicotiana tabacum],
SP|P21357 from Solanum tuberosum; contains Pfam Class-II
DAHP synthetase family domain PF01474
Length = 527
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 603 LTRPWSRRLAQSVCTPRIPLVSSASTGMSNPLTSSLP 493
++RP S R++ P+ P SSAS + P T + P
Sbjct: 29 VSRPTSFRISAVQTDPKTPAASSASAATTTPATLTKP 65
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 369 RPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDS--GRSSLADKATGEMKSVGWTSL 527
RP GT+ LS SP PS+SP P P S G ++ D ++ G+ ++
Sbjct: 1123 RPVFGTSHQHMSLS-SPPLPSSSPPPPPAPPSQQGECAMPDSYLNGFENGGYRNV 1176
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,277
Number of Sequences: 28952
Number of extensions: 290273
Number of successful extensions: 1105
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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