Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m23f
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 30 0.33
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.77
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 27 1.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 1.8
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 27 2.3
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 3.1
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 4.1
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 25 7.2
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 7.2
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 7.2
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 9.5
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 25 9.5
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.5
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 509 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGW 366
S TT+ S + S ST PQTFP+SG + ++ + GW
Sbjct: 457 STSTTNPSATPTTGDPSNSTYGGPQTFPNSGNNPNFNRGIAGIVPPGW 504
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.77
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +2
Query: 320 CTPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPW 499
CT + + S+ +S P+T ++P + + P P S S+ + S+ +T
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST----SSTDTNSSPLPTTSTS 284
Query: 500 CPPTVSLRPPARKARLPST 556
C + S+ PP + P T
Sbjct: 285 CTTSTSI-PPTGNSTTPVT 302
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 322 HPSDTIGLVSINRDVQPTDFISPVALSASEDLPES 426
HP+ T G VS N + P + V +LP S
Sbjct: 669 HPTGTFGNVSGNYNTSPAQSVGDVTAEEGSELPSS 703
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 335 PLVSSASTGMSNPLTSSLPW---LCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCP 505
P ++AST +S+ +S PW A + P P A +S L N +S PW
Sbjct: 407 PPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMN-PSSLPPWQQ 465
Query: 506 PT 511
PT
Sbjct: 466 PT 467
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 219 AEDPARVNEGTGAGVEQTTGRNSDA*MDLVGLVSEGNQGVGT 94
+ED N+ E T SD +D G +EG G GT
Sbjct: 69 SEDSDAANQSPSGAPESQTEEESDRKIDGTGSSAEGGDGSGT 110
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 286 PSLVTETSAVRLHPSDTIGLVSI----NRDVQPTDFISPVALSASED 414
P L + TS +RL PSDT + + N ++ + +P+ S S D
Sbjct: 97 PILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILESTSSD 143
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.6 bits (56), Expect = 3.1
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Frame = +1
Query: 262 YGLVVVINPSLVTETSAVRLHPSDTIGLVSINRDVQPTDFISPVALSASEDLPE-SGNVC 438
Y L+ + P L ++ R+ + IG + N V + SPV +EDLP +G+
Sbjct: 40 YNLLGRVVPYLKSKNWDTRVAAAKAIGGIVENVPVWNPNRTSPVKKEETEDLPSFNGDTE 99
Query: 439 GFGEVDGEPGEQLSCFDVSVVPADGLLEATSEEGQTSKYDVGTALVSDDVQVAVLLAGAD 618
+ E G S VV ++ L + SE + + + T S +++ ++ G D
Sbjct: 100 EKPFIKTEEGAPASSQSQVVVSSN--LTSNSEVSKLEEERLSTRSHSQEIK-PIVDFGPD 156
Query: 619 ENSA 630
E +A
Sbjct: 157 EETA 160
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 548 EVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 375
EV+PSS++ RP + S ++ P ++S PQ + + S L+ AT + S
Sbjct: 82 EVFPSSVMPQLRPLDSSLSVSPEMDGWPWHHNSSSNPQGYAWT-PSLLSSNATSYLHS 138
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 64 LVQGRSTGVQSTNALVALGDKPYQVHLRIAVSTSG 168
L G +T V T DKP V +IAV TSG
Sbjct: 169 LESGLATPVVETLKKATTSDKPAGVKKKIAVMTSG 203
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 37 SFVLLCGLALVQGRSTGVQSTNALVALGDKPYQV 138
+++ +CG + R TG+ + N +V+ G + Y V
Sbjct: 818 NYLTICGAVIGWTRGTGLMAPNNIVSQGIEKYGV 851
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 148 IAVSTSGLLNTCAGSLIHSRWVLSAASCLQDVRFIW 255
+A+S+ +L T A +W + C+Q + F+W
Sbjct: 441 LALSSDDVLITGADDKTVRQWDIVTGRCIQTLDFVW 476
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 80 APVCKVPTPWLPSETSPTRSIYASLFRPVVCSTP 181
+P+ P +PS SPT +I+++ + TP
Sbjct: 688 SPIRASPVKTIPSSPSPTTNIFSAPLNNITNCTP 721
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 249 ETDILEAASGAEDPARVNEGTGAGVEQTTGRNSDA*MDLVG 127
E ++ ++A+G DP ++ T V QTT DA ++ G
Sbjct: 241 EFEVTDSAAGTVDPTILDNATAGQVGQTTW-EGDAEWNITG 280
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 524 ASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKAT 390
+S P + TS + + P+TSP P T SS+ +T
Sbjct: 94 SSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNST 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,941
Number of Sequences: 5004
Number of extensions: 60840
Number of successful extensions: 240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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