Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m22r
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   223   5e-59
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   223   9e-59
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ...    28   4.1  
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono...    28   4.1  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    27   7.1  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    27   7.1  
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator...    27   9.4  
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d...    27   9.4  
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac...    27   9.4  
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac...    27   9.4  

>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  223 bits (546), Expect = 5e-59
 Identities = 110/164 (67%), Positives = 129/164 (78%), Gaps = 1/164 (0%)
 Frame = -2

Query: 553 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 374
           M +YS+EPDN  KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 373 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 197
            RF  GVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 196 NRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 65
           N+A   RRRTYRAHGRINPYMS+PCHIE+ LSE+E+ V +   T
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 164


>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  223 bits (544), Expect = 9e-59
 Identities = 109/164 (66%), Positives = 129/164 (78%), Gaps = 1/164 (0%)
 Frame = -2

Query: 553 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 374
           M +YS+EPDN  KSCKARG++LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 373 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 197
            RF  GVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 196 NRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 65
           N+A   RRRTYRAHGRINPYMS+PCHIE+ LSE+E+ V +   T
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 164


>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 449

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 292 RISWASDPVLCQTALLEHSD 351
           R+SWASD +LCQ  L    D
Sbjct: 9   RVSWASDSMLCQVKLFLSDD 28


>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
           splice site at exon 1, unknown (C40) protein, Homo
           sapiens, EMBL:AF103798
          Length = 441

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
 Frame = -2

Query: 472 NTYETAMAIRKMPLR--RAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPK 299
           N Y  A+    M L     V  L   +E  +          +  C  AKQ    Q R  +
Sbjct: 333 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENAKQDKYMQNRLVR 392

Query: 298 KSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRR 173
               FL  L+RN   N  +  ++V    I+  +V  A  L R
Sbjct: 393 LVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRVREAAGLFR 434


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 324 AQHRVAGPRNPPNSSCSY 271
           AQ   A P++PP+SSCS+
Sbjct: 765 AQGTAAAPKSPPSSSCSH 782


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
            protein low similarity to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 541  SREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKE 386
            SR+P     S       + VH +N Y   +    +P R +++ + N+IEK E
Sbjct: 1222 SRKPGRVIDSVYYENVRVLVHEENIYR--LECSSLPSRLSIQLMDNIIEKPE 1271


>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
           putative similar to SWISS-PROT:P52178 triose
           phosphate/phosphate translocator [Cauliflower] {Brassica
           oleracea}
          Length = 408

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -1

Query: 386 VYSIPSLQRRRWSLCSS 336
           V SIPSL RR W L SS
Sbjct: 43  VVSIPSLSRRSWRLASS 59


>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 389

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 207 WSITSLSTSKVLLSAFDSAFLNNCKRNSA 293
           W + ++  + + L A  S F+NNC +NSA
Sbjct: 57  WLVPAIVVANIALFAI-SMFINNCPKNSA 84


>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
           (GT2) identical to GT2 factor [Arabidopsis thaliana]
           GI:416490, GI:2664202 (DNA binding factor GT-2 from
           Arabidopsis)
          Length = 575

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 319 TQGRWPKKSAEFLLQLLRNAESN 251
           +  RWPK   E L+++ +N E+N
Sbjct: 394 SSSRWPKTEVEALIRIRKNLEAN 416


>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
           (GT2) identical to GT2 factor [Arabidopsis thaliana]
           GI:416490, GI:2664202 (DNA binding factor GT-2 from
           Arabidopsis)
          Length = 498

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 319 TQGRWPKKSAEFLLQLLRNAESN 251
           +  RWPK   E L+++ +N E+N
Sbjct: 317 SSSRWPKTEVEALIRIRKNLEAN 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,687,929
Number of Sequences: 28952
Number of extensions: 257775
Number of successful extensions: 664
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)